Pairwise Alignments

Query, 606 a.a., single-stranded-DNA-specific exonuclease recJ from Caulobacter crescentus NA1000

Subject, 572 a.a., single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  231 bits (590), Expect = 5e-65
 Identities = 179/575 (31%), Positives = 280/575 (48%), Gaps = 27/575 (4%)

Query: 30  PADLAVVREIQQRHGLIEPLAKALVSRGVTLE-HAEHYLRPTLKALFPDPSLFTDMDRAA 88
           P      + + Q  G+   L + LV RG+T    A+ + RP L  L  DP L  DMD A 
Sbjct: 12  PEQAETSQTLAQELGISPILGQLLVQRGITKAGDAKKFFRPQLPDLH-DPFLMKDMDIAV 70

Query: 89  EILIDALERGRPTMVFADYDVDGATSAAQLVRWFRHMGVELPIYIPDRLTEGYGPSPAAF 148
           E L  A+ +    +++ DYDVDG T+ A + ++ +     +  YIPDR  EGYG S    
Sbjct: 71  ERLNKAMGKKERILIYGDYDVDGTTAVALVYKFIQQFYSNIDYYIPDRYNEGYGISKKGV 130

Query: 149 RKIRDGGAELVVTLDCGAAAYDAIASAGEIGLEVVVIDHHLMREDPPAAAAVVNPNRPGC 208
               + G  L++ LDCG  A + I  A E G++ ++ DHH+  +  P A A++N  R   
Sbjct: 131 DYASETGVGLIIVLDCGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAILNAKRLDN 190

Query: 209 PSGQGVLAAAGVTFVLLTALNREARKRGL-FTEDRPQPDPRQWLDLVALGEVCDVTQLVG 267
                 L+  GV F  + A    A   G+ F    P       LDLVA+    D+  ++G
Sbjct: 191 TYPYTHLSGCGVGFKFMQAF---AINNGIEFHHLIP------LLDLVAVSIASDIVPIMG 241

Query: 268 FNRALTALGLRAMGAWANPGLKALFEV-GKGSGEPSVFTAGFILGPRINAGGRVGRSDLG 326
            NR L   GL+ + +  + G+KA+ +V G    E +V    F +GPRINA GR+      
Sbjct: 242 ENRILAYHGLKQLNSNPSVGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQNGKEA 301

Query: 327 ARLLSTDDPLEARALAEELDSLNTERKAVEAAVVEEAAAMLERGSNFNPDAPVIVVAGDD 386
             LL+  D   A   A +++  N  RK ++ ++ EEA  ++      + +   IV+  ++
Sbjct: 302 VDLLTEKDFSAALEKAGQINQYNETRKDLDKSMTEEANNIVANLEGLS-ERRSIVLYNEE 360

Query: 387 WHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQSGVNLGRAIQAAFEAGLLMA 446
           WH GVIGIVA RL E Y +P VV  + R  ++  GS RS SG ++ +AI+   +  LL  
Sbjct: 361 WHKGVIGIVASRLTEVYYRPAVV--LTRTDDMATGSARSVSGFDVYKAIEHCRD--LLEN 416

Query: 447 GGGHAMAAGLSIRPEMIPEFRAFLEERLAGEMEAVGVEAV-EVDALVQPRAANRALLDDF 505
            GGH  AAGLS++ E +  F    EE ++  +      AV  +DA +  R       +D 
Sbjct: 417 FGGHTYAAGLSMKVENVEAFTRRFEEYVSQHILPEQTSAVINIDAEIDFRDITSKFFNDL 476

Query: 506 QRLAPFGPGNPEPLFALSQVRPERVSALKG---GHVRMDLVGPTGDRI-KAISWRSAETP 561
           ++  PFGP N +P+F    V     S + G    H++++LV    + +   I++  +   
Sbjct: 477 KKFNPFGPDNIKPIFCTHHVYDYGTSKVVGRDQEHIKLELVDNKSNNVMNGIAFGQSS-- 534

Query: 562 LGQRLLAGGGPLDVVGKLKPDDYMGRNGVQLEIED 596
              R +      D+   ++ + +  R  VQL+IED
Sbjct: 535 -HVRYIKTKRSFDICYTIEENTHK-RGEVQLQIED 567