Pairwise Alignments

Query, 906 a.a., valyl-tRNA synthetase from Caulobacter crescentus NA1000

Subject, 958 a.a., valyl-tRNA synthetase (RefSeq) from Shewanella sp. ANA-3

 Score =  876 bits (2263), Expect = 0.0
 Identities = 464/979 (47%), Positives = 607/979 (62%), Gaps = 98/979 (10%)

Query: 2   LEKTFDPQSVEPRLYAAWEASGAFKPAEDPNAEPFVIVIPPPNVTGSLHIGHALNNTLQD 61
           +EKT+DPQS+E  LY  WE  G FKP  D +   + I+IPPPNVTGSLH+GHA  +T+ D
Sbjct: 1   MEKTYDPQSIEQTLYQNWEEQGYFKPHGDASQGNYCIMIPPPNVTGSLHMGHAFQDTIMD 60

Query: 62  VLTRFHRMRGKAALWLPGTDHAGIATQMVVERQLAAAGNIGRRDMGREAFVDKVWEWKAE 121
            L R+ RM+GK  LW  GTDHAGIATQM+VER+L A     R D+GR+AF++KVWEWKA+
Sbjct: 61  TLIRYQRMKGKNTLWQVGTDHAGIATQMLVERKLEAEEGKSRHDLGRDAFMEKVWEWKAQ 120

Query: 122 SGGAITNQLRRLGASCDWSRERFTLDEGLSAAVRKVFVQLYKQNLLYRDKRLVNWDPQFQ 181
           SGG IT QLRR+GAS DW RERFT+DEGLS AV++VFV+LY+ +L+YR KRLVNWDP+  
Sbjct: 121 SGGTITKQLRRMGASVDWDRERFTMDEGLSKAVQEVFVRLYEDDLIYRGKRLVNWDPKLH 180

Query: 182 TAISDLEVEQKEVDGAYWHFAYPLADGVTYQHPIAFDEDGKATEFETRDYIVVATTRPET 241
           TAISDLEVE KE  G  WH  YPLADG           DGK       DY+ VATTRPET
Sbjct: 181 TAISDLEVENKEKQGHMWHLRYPLADG-------ELTADGK-------DYLEVATTRPET 226

Query: 242 MLGDTGVAVHPDDERYKGLVGKFVTLPIVGRRIPIVADDYADPTKGSGAVKITPAHDFND 301
           MLGD+ VAVHPDDERY+ L+GKF+ LPIV RRIPIVADDY D   G+G VKITPAHDFND
Sbjct: 227 MLGDSAVAVHPDDERYQALIGKFILLPIVNRRIPIVADDYVDMEFGTGCVKITPAHDFND 286

Query: 302 FGVGKRAGLEAINILTVEA-----------------KLNDSVPAEYVGMDRFVARKAIVA 344
           + VGKR  L   N+LT++A                  L+ S+P  + G+DRF AR AIVA
Sbjct: 287 YEVGKRHKLPMFNVLTLDAAIRASAEVVNTDGTINTSLDGSLPERFAGLDRFKARDAIVA 346

Query: 345 RAEEEGWLKEIEKTKHMVPHGDRSGVVIEPFLTDQWYVDAKTLAQPALKAVETGETIFEP 404
             E  G L++I      VP+GDRSGVVIEP LTDQWYV    +A+ A++AVE G+  F P
Sbjct: 347 EFETLGLLEKIAPHGLKVPYGDRSGVVIEPMLTDQWYVAVAPMAKTAIEAVENGDIKFVP 406

Query: 405 KHWEKTYFEWLRNIEPWCVSRQLWWGHRIPAWFGPEGSIFVEESEEAAYAAARAQFGAD- 463
           + +E  YF W+R+I+ WC+SRQLWWGHRIPAW+   G ++V  +E    A  RA+   D 
Sbjct: 407 QQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDANGKVYVGRNE----AEVRAKHNIDD 462

Query: 464 -VQLTQDEDVLDTWFSSALWPFSTLGWPEKTSDLERFYPTSTLVTGFDIIFFWVARMMMM 522
            + L QDEDVLDTWFSSALW FSTLGWP+   DL+ F+PT  LVTGFDIIFFWVARM+MM
Sbjct: 463 AIALRQDEDVLDTWFSSALWTFSTLGWPDNVEDLKTFHPTDVLVTGFDIIFFWVARMIMM 522

Query: 523 GIHFMGE------APFKQVFINALVRDEKGAKMSKSKGNVMDPLILIDEL---------- 566
            +H + +       PFK V++  L+RDE G KMSKSKGNV+DPL +ID +          
Sbjct: 523 TMHLIKDEDGKPQVPFKTVYVTGLIRDEAGNKMSKSKGNVLDPLDMIDGIDLEALVEKRT 582

Query: 567 ---------------------------GCDAVRFTLTAMSGQARDIKLSKQRIEGYRNFG 599
                                      G DA+RFTL AM+   RDI    +R++GYR+F 
Sbjct: 583 GNMMQPQLAAKIEKSTRKEFENGIEAHGTDALRFTLAAMASTGRDINWDMKRLDGYRSFC 642

Query: 600 TKLWNASRFAQMNECVRVEGFD--PSTVQQP--------INKWIRGETVKTVAEVTKALE 649
            KLWNASR+  MN     EG D  P++             ++WI G   +TV      + 
Sbjct: 643 NKLWNASRYVLMN----TEGQDCGPNSPDYQGGEMELSLADRWIIGLFNQTVKTYDDHMT 698

Query: 650 APSFDEAAGALYRFVWNVFCDWYLELAKPILNGDDAAAKAETRATAAWALDVILKLLHPV 709
              FD AA  LY F WN FCDWYLEL KP+L   + A    TR T    L+ + +L+HP+
Sbjct: 699 NYRFDLAANTLYEFTWNQFCDWYLELTKPVLQNGNEAQMRGTRHTLVNVLEAMQRLMHPM 758

Query: 710 MPFITEELWEKTAEFGPARETMLISAKWPELPADWIDAEAEAEIGWLVETVGEIRSIRAE 769
           MP+ITE +W++      A+   ++ A +P   A  +DA A A++ W+ + +  +R+IRAE
Sbjct: 759 MPYITETIWQRVKPLTGAQGDTIMLAPFPSYDAAKVDATAMADLEWVKQVIVAVRNIRAE 818

Query: 770 MNVPPSAKPGLTIVGAGPETKARLARHRDLLLTLARLDAVR---EADAAPAGSAPVVMGE 826
           +N+ PS      + G   + +AR+  ++    TLARL+++    E + AP  +  ++ GE
Sbjct: 819 LNIAPSKPLNALLRGVSAQDQARVEANQAFFTTLARLESMTILGEGETAPMSTTGLI-GE 877

Query: 827 ATGALGVAEFIDVAAEKARLTKDIAGHAGEIEKVNKKLGNPDFLARAKEEVVEENRERLA 886
               + +A  +DVAAE AR+ K +     EI ++  KL N  F+A+A   V+++ R ++A
Sbjct: 878 MELLIPMAGLVDVAAEMARIDKQLEKLTQEIARIEGKLSNEGFVAKAPPAVIDKERAKMA 937

Query: 887 EAEAAKAKLEAALSRLASV 905
           +      KL+   +  A +
Sbjct: 938 DLSRDMDKLKEQKAEFAKL 956