Pairwise Alignments

Query, 338 a.a., DNA-directed RNA polymerase alpha chain from Caulobacter crescentus NA1000

Subject, 333 a.a., DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type from Pseudomonas stutzeri RCH2

 Score =  302 bits (773), Expect = 9e-87
 Identities = 157/325 (48%), Positives = 219/325 (67%), Gaps = 7/325 (2%)

Query: 7   NELIRPEKPQIETGADATRKARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVTAIQIDG 66
           NE + P    I+    +  +A+I  EPLERGFG TLGNALRR+LLSS+ G AV   +IDG
Sbjct: 6   NEFLTPR--HIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAEIDG 63

Query: 67  VVHEFSSLEGVREDVVDIVLNIKQLAVRMHAEGPKRMTLRATGPGPVTAGQIETPADIEI 126
           V+HE+S++EGV+EDV++I+LN+K +A+++H      ++L   G G VTA  I+   D+EI
Sbjct: 64  VLHEYSAIEGVQEDVIEILLNLKGIAIKLHGRDEVTLSLVKKGAGAVTAADIQLDHDVEI 123

Query: 127 LNPDHVLCTLDDGASVRMEFTVNNGKGYVPAD---RNRPEDAPIGLIAVDALYSPVKRVA 183
           +N DH++  L    S+ M+  V  G+GY PAD    +  E   IG + +DA +SPV+RVA
Sbjct: 124 VNGDHLIANLAANGSLNMKLKVARGRGYEPADARQSDEDESRSIGRLQLDATFSPVRRVA 183

Query: 184 YRVEPTRQGQSLDYDKLILEVETNGAVTPVDAVAYAARILQDQLQIFITFEEPKAKSADE 243
           Y VE  R  Q  + DKL++++ETNG + P +A+  AA ILQ QL  F+  +        E
Sbjct: 184 YVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPVVIE 243

Query: 244 SKPELPFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNE 303
            + E+  +P LL+ VD+LEL+VRSANCLK +NI YIGDLIQ+TE E+L+TPN G+KSL E
Sbjct: 244 QEDEI--DPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLTE 301

Query: 304 IKEVLAGMGLHLGMDVPNWPPENIE 328
           IK+VLA  GL LGM + NWPP +++
Sbjct: 302 IKDVLASRGLSLGMRLDNWPPASLK 326