Pairwise Alignments

Query, 338 a.a., DNA-directed RNA polymerase alpha chain from Caulobacter crescentus NA1000

Subject, 332 a.a., DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) from Xanthomonas campestris pv. campestris strain 8004

 Score =  317 bits (813), Expect = 2e-91
 Identities = 166/325 (51%), Positives = 225/325 (69%), Gaps = 9/325 (2%)

Query: 7   NELIRPEKPQIETGADATRKARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVTAIQIDG 66
           N+++RP  PQIE   D   +A++V EPLERG+G TLGNALRRVLLSS+ G A+T ++IDG
Sbjct: 6   NQVLRPRGPQIERLTD--NRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVEIDG 63

Query: 67  VVHEFSSLEGVREDVVDIVLNIKQLAVRMHAEGPKRMTLRATGPGPVTAGQIETPADIEI 126
           V+HE++++EG++EDV+D++LN+K +A+RMH+     ++L   GPG VTA  I T  ++EI
Sbjct: 64  VLHEYTTVEGLQEDVLDVLLNLKDVAIRMHSGDSATLSLSKQGPGTVTAADIRTDHNVEI 123

Query: 127 LNPDHVLCTLDDGASVRMEFTVNNGKGYVP-ADRNRP--EDAPIGLIAVDALYSPVKRVA 183
           +N DHV+C L    ++ M   +  G GY P A R RP  E   IG + +DA +SPV+RVA
Sbjct: 124 INGDHVICHLTKDTALNMRLKIERGFGYQPAAARRRPDEETRTIGRLMLDASFSPVRRVA 183

Query: 184 YRVEPTRQGQSLDYDKLILEVETNGAVTPVDAVAYAARILQDQLQIFITFEEPKAKSADE 243
           Y VE  R  Q  D DKL++++ETNG +   +AV  AA IL DQL +F  F     +    
Sbjct: 184 YAVEAARVEQRTDLDKLVIDIETNGTIDAEEAVRTAADILSDQLSVFGDFTH---RDRGA 240

Query: 244 SKPELP-FNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLN 302
           +KP     +P LL+ +D+LEL+VRSANCLK ++I YIGDLIQKTE E+L+TPN G+KSL 
Sbjct: 241 AKPAASGVDPVLLRPIDDLELTVRSANCLKAESIYYIGDLIQKTEVELLKTPNLGKKSLT 300

Query: 303 EIKEVLAGMGLHLGMDVPNWPPENI 327
           EIKEVLA  GL LGM + NWPP  +
Sbjct: 301 EIKEVLAQRGLALGMKLENWPPAGV 325