Pairwise Alignments

Query, 338 a.a., DNA-directed RNA polymerase alpha chain from Caulobacter crescentus NA1000

Subject, 340 a.a., DNA-directed RNA polymerase, alpha subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  489 bits (1260), Expect = e-143
 Identities = 242/336 (72%), Positives = 288/336 (85%)

Query: 1   MIERNWNELIRPEKPQIETGADATRKARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVT 60
           +I++NW ELI+P K  IE    + + A +VAEPLERGFG+TLGNALRRVLLSSLQGAAVT
Sbjct: 3   VIQKNWQELIKPNKLMIELVGGSKKVATVVAEPLERGFGLTLGNALRRVLLSSLQGAAVT 62

Query: 61  AIQIDGVVHEFSSLEGVREDVVDIVLNIKQLAVRMHAEGPKRMTLRATGPGPVTAGQIET 120
           AIQI+GV+HEFSS+ GVREDV D++LNIK LA+ MH+EGP+RMTL+A+GPG VTA QIE 
Sbjct: 63  AIQIEGVLHEFSSIPGVREDVTDVILNIKGLALLMHSEGPRRMTLKASGPGEVTAAQIEM 122

Query: 121 PADIEILNPDHVLCTLDDGASVRMEFTVNNGKGYVPADRNRPEDAPIGLIAVDALYSPVK 180
            +DIEI+NPD V+C LD+GA++ MEFTV  GKGYVP+ +NRPEDAPIG I +D+++SPV 
Sbjct: 123 GSDIEIMNPDLVICHLDEGATLSMEFTVGMGKGYVPSTQNRPEDAPIGYIPIDSIFSPVT 182

Query: 181 RVAYRVEPTRQGQSLDYDKLILEVETNGAVTPVDAVAYAARILQDQLQIFITFEEPKAKS 240
           +V+YRVE +R GQ  DYDKL + VET+G+V P DAVA AARILQDQLQ+FI FEEP+A S
Sbjct: 183 KVSYRVENSRVGQVTDYDKLSMVVETDGSVGPEDAVALAARILQDQLQLFINFEEPQAVS 242

Query: 241 ADESKPELPFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS 300
            ++   ELPFN  LL+KVDELELSVRSANCLKNDNI+YIGDL+QKTEAEMLRTPNFGRKS
Sbjct: 243 EEKKDDELPFNKNLLRKVDELELSVRSANCLKNDNIIYIGDLVQKTEAEMLRTPNFGRKS 302

Query: 301 LNEIKEVLAGMGLHLGMDVPNWPPENIEDLAKKFED 336
           LNEIKEVLA MGLHLGM++ NWPPENIEDLAKK E+
Sbjct: 303 LNEIKEVLAQMGLHLGMEISNWPPENIEDLAKKLEE 338