Pairwise Alignments

Query, 338 a.a., DNA-directed RNA polymerase alpha chain from Caulobacter crescentus NA1000

Subject, 330 a.a., DNA-directed RNA polymerase alpha chain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  233 bits (595), Expect = 4e-66
 Identities = 124/307 (40%), Positives = 195/307 (63%), Gaps = 8/307 (2%)

Query: 24  TRKARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVTAIQIDGVVHEFSSLEGVREDVVD 83
           +R  +    PLE GFG+T+GNALRR+LLSSL+G A+T I+IDGV HEFSS+ GV+EDV +
Sbjct: 19  SRFGKFEFRPLEPGFGITVGNALRRILLSSLEGFAITTIRIDGVEHEFSSVPGVKEDVTN 78

Query: 84  IVLNIKQLAVRMHAEG--PKRMTLRATGPGPVTAGQI-ETPADIEILNPDHVLCTLDDGA 140
           I+LN+KQ+  +   E    +++++         AG I +     E+LNP+ V+C LD  A
Sbjct: 79  IILNLKQVRFKQVVEEFESEKVSITVENSSEFKAGDIGKYLTGFEVLNPELVICHLDSKA 138

Query: 141 SVRMEFTVNNGKGYVPADRNRPEDAPIGLIAVDALYSPVKRVAYRVEPTRQGQSLDYDKL 200
           +++++ T+N G+GYVPAD NR     + +I +D++Y+P++ V Y VE  R  Q  DY+KL
Sbjct: 139 TMQIDITINKGRGYVPADENREYCTDVNVIPIDSIYTPIRNVKYAVENFRVEQKTDYEKL 198

Query: 201 ILEVETNGAVTPVDAVAYAARILQDQLQIF----ITFEEPKAKSADESKPELPFNPALLK 256
           +LE+ T+G++ P +A+  AA+IL     +F    IT E       +E   E+     LLK
Sbjct: 199 VLEISTDGSIHPKEALKEAAKILIYHFMLFSDEKITLESNDTDGNEEFDEEVLHMRQLLK 258

Query: 257 -KVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLAGMGLHL 315
            K+ +++LSVR+ NCLK  ++  +GDL+Q  + ++L+  NFG+KSL E+ ++L  + L  
Sbjct: 259 TKLVDMDLSVRALNCLKAADVETLGDLVQFNKTDLLKFRNFGKKSLTELDDLLESLNLSF 318

Query: 316 GMDVPNW 322
           G D+  +
Sbjct: 319 GTDISKY 325