Pairwise Alignments

Query, 338 a.a., DNA-directed RNA polymerase alpha chain from Caulobacter crescentus NA1000

Subject, 325 a.a., DNA-directed RNA polymerase subunit alpha from Burkholderia phytofirmans PsJN

 Score =  310 bits (793), Expect = 4e-89
 Identities = 165/324 (50%), Positives = 226/324 (69%), Gaps = 8/324 (2%)

Query: 9   LIRPEKPQIETGADATRKARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVTAIQIDGVV 68
           L++P+   +E+  ++   A++V EP ERG+G TLGNALRRVLLSS+ G A T + I GVV
Sbjct: 5   LLKPKIIAVESLGES--HAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAGVV 62

Query: 69  HEFSSLEGVREDVVDIVLNIKQLAVRMHAEGPKRMTLRATGPGPVTAGQIETPADIEILN 128
           HE+S+L+GV+EDVV+++LN+K +  ++H      +TLR  G G VTAG IE   D E++N
Sbjct: 63  HEYSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEVIN 122

Query: 129 PDHVLCTLDDGASVRMEFTVNNGKGYVPADRNR--PEDAP-IGLIAVDALYSPVKRVAYR 185
           PDHV+  L  G  + ++  V  G+GYVP +  R   E A  IG I +DA +SPV+RV+Y 
Sbjct: 123 PDHVIAHLSKGGKLDVQIKVEKGRGYVPGNVRRYGEESAKIIGRIVLDASFSPVRRVSYA 182

Query: 186 VEPTRQGQSLDYDKLILEVETNGAVTPVDAVAYAARILQDQLQIFITFEEPKAKSADESK 245
           VE  R  Q  D DKL++ +ETNG ++P +A+  +ARIL DQL +F   E  +A +   S+
Sbjct: 183 VESARVEQRTDLDKLVMNIETNGVISPEEAIRQSARILVDQLSVFAALEGTEATAEAPSR 242

Query: 246 -PELPFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEI 304
            P++  +P LL+ VD+LEL+VRSANCLK +NI YIGDLIQ+TE E+L+TPN GRKSLNEI
Sbjct: 243 APQI--DPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEI 300

Query: 305 KEVLAGMGLHLGMDVPNWPPENIE 328
           KEVLA  GL LGM + NWPP  ++
Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLD 324