Pairwise Alignments

Query, 1027 a.a., alpha-L-rhamnosidase from Caulobacter crescentus NA1000

Subject, 892 a.a., alpha-rhamnosidase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  160 bits (404), Expect = 5e-43
 Identities = 162/720 (22%), Positives = 287/720 (39%), Gaps = 42/720 (5%)

Query: 306  ARLLRRTFTLSKPPTQARLYVSALGGYRIWLNGRRVGDDELQTEPAAYRRHVPYRAYDVT 365
            A LLR+   + +  T   LYV++LG + +++NG++V ++ L    +   +      YDV+
Sbjct: 164  APLLRKKVQIGELATTF-LYVNSLGYHEVYVNGKKVTENVLTPAVSQLNKRSLMVTYDVS 222

Query: 366  DLLRDGENVVGLIVGDGTFASYQAPDGRYAYGPGPRRVRLFLESRDSGDRVERVATDGEW 425
              L++GEN + + +G G +   +   G    GP    V+  L    +G      ATD  W
Sbjct: 223  SYLKEGENDLLIWLGQGWYK--KTTFGAAYDGP---LVKAELNMLRNGKWEVLTATDTSW 277

Query: 426  RHALSPVL-----MSEIYAGEDHDLRLWPRGWAEPGFDDSGWSRVWTAPPPEGAPCALLS 480
            R   S         +  + GE  D R+ P  ++    D   W  V     P       + 
Sbjct: 278  RGRESGYSDTGNWCALQFGGERVDGRIVPTDFSTYSLDKMKWYPVVEVNVPRHIVSPQMC 337

Query: 481  EPIRETRVLKAASIRAVGPGRHIVDFGQNFAGRVRLRVKG-AKGAPVIVRHAEILDGQGA 539
            E  +  + L+  SIR +     +VD G+   G   +++   + G  V + +++ L  +G 
Sbjct: 338  EANKIHQTLQPVSIRKLSEDTWLVDMGRIQTGWFEMKMPMLSAGHEVTMEYSDNLTKEGE 397

Query: 540  LDRRNLRVARAEDRYILNGDDAPETLQPSFTYQGFRYAEIEGVAGLDR-DMIDGVVLSSD 598
             D++        D YI  G    E  +  F +  +RY  I  +    + + I  + +  D
Sbjct: 398  FDKQG-----ESDVYIAGGRRG-EYFRNKFNHHAYRYVRISNLPARPKTEWIKSLQIYGD 451

Query: 599  LPEIGVFRTAEPLVQNLWLNSLWSQRS-NFMGIPTDCPQRDERLGWTGDAQVFWETAAFN 657
              +   F  ++  +  +     ++ R   F G   DCP   ER G+ GD      +    
Sbjct: 452  YRQTATFECSDADLNAIHNMIQYTMRCLTFSGYMVDCPHL-ERAGYGGDGNSSTMSLQTM 510

Query: 658  MDVGGFTRGFARTLRDDQAPNGAYPMWSPSPRGLGWGTTTPTPGWADGGVMLPYVAYLHS 717
             DV      + +T  D     G+     P+P   G G     P W    V  P+  Y++ 
Sbjct: 511  YDVAPTFTNWIQTWGDSMREGGSLAHVGPNPGAGGGG-----PYWCGFIVQAPWRTYVNY 565

Query: 718  GDRSIVDENWTAMSAYVSGVLAENPDGLWRRGRGADF-----GDWLALDGKWPGDETTPK 772
             D  ++   +  M  + S V     DGL +R     +     GDWLA  G   G +++  
Sbjct: 566  NDPRLIKNYYPKMKEWFSYVDKYTVDGLLKRWPDTQYRDWFLGDWLAPIGVDAGAQSSV- 624

Query: 773  DLIATAMLARSVDQLAQMAAWTGRSAEAKTWRGQADRIKAAFASAFVR-ADGTVGNGSHT 831
            DL+    ++  +  + ++A   G   EA+ +  +   +       F     G    GS  
Sbjct: 625  DLVNNCFISECLGTMEKIALMLGEKEEAEKFAMRRKNLNELIHQKFYHPGKGIYSTGSQL 684

Query: 832  GYILALRLGLAPQPLRKAAGEHLAADIRRRGT-LLSTGFLGTPLALDALADHGHAGLAFD 890
                 + +G  P  L       +  D  ++    ++ G +G P+  +    +      + 
Sbjct: 685  DMCYPMLVGAVPDSLYDDVKRKMMTDTEKQHKGHIAVGLVGVPILTEWAIRNREVDFLYQ 744

Query: 891  LLLRTEYPSWGYMVRRGATTTWERWNGDTGDVSMNSFNHYALGAICGFLYRRVAG--VEP 948
            +L + +YP + YM+  GAT TWE W+G+   V      H     I  + Y+ + G  ++ 
Sbjct: 745  MLKKRDYPGYLYMIDNGATATWEYWSGERSRV------HNCYNGIGTWFYQAIGGLRIDE 798

Query: 949  ITPGFGAFRVAPLIDPRLRSAGATVDSVRGRIETDWRVTGDKAVLKVRVPANSRAEVVLP 1008
              PG+    + P I   L  A    D+  G I  DW +T +   L+V +P    A + +P
Sbjct: 799  SIPGYQHVFIDPQIPKGLTWAKMAKDTPYGVIAVDWELTDNIMDLQVDIPVGVTATLCIP 858



 Score = 99.4 bits (246), Expect = 1e-24
 Identities = 60/151 (39%), Positives = 82/151 (54%), Gaps = 8/151 (5%)

Query: 7   RALLLGLPVTS-----GALADGASQTSRWRAVGLRTAMRRQPLGIDDPQPMLSWRLEGPA 61
           + LLLG+ +         +  G      +  V L+      PLGID+  P LSW+L+G  
Sbjct: 4   KKLLLGIGIMCCLWCLPKIVHGKENKVSFSLVELKCENMVDPLGIDNVTPHLSWKLKGD- 62

Query: 62  GAV--QSAYQIMVASTAEKLHAGVADLWDSGRVKSSESVGVRYGGAPLKPRQRCVWRVRA 119
           G V  Q+ Y+I VAS +  L  G ADLW SG++KS  SV V Y G PL  R  C WRVRA
Sbjct: 63  GVVDGQAFYEIQVASDSLLLIGGKADLWKSGKLKSDVSVMVPYQGLPLASRSLCYWRVRA 122

Query: 120 WDAAGRASDWSPPATWEMGLIDQSEWIGDWL 150
           WD     S WSP A + +GL+++ +  G ++
Sbjct: 123 WDRKRHVSQWSPVARFSVGLLNKEQIHGVYI 153