Pairwise Alignments

Query, 1027 a.a., alpha-L-rhamnosidase from Caulobacter crescentus NA1000

Subject, 881 a.a., alpha-rhamnosidase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  314 bits (804), Expect = 2e-89
 Identities = 214/738 (28%), Positives = 340/738 (46%), Gaps = 39/738 (5%)

Query: 305  PARLLRRTFTLSKPPTQARLYVSALGGYRIWLNGRRVGDDELQTEPAAYRRHVPYRAYDV 364
            PA   R+TF   K    AR Y++  G Y +++NG ++G+  L      + R   Y  YDV
Sbjct: 155  PAPYFRKTFDTQKKVKSARAYIAVAGLYELYINGEKIGNHRLDPLYTRFDRRNFYVTYDV 214

Query: 365  TDLLRDGENVVGLIVGDGTFASYQAPDGRYAYGPGPRRVRLFLESRDSGD--RVERVATD 422
            T+ L+ G+N +G+++G+G +         +   P   R    ++ R + +    E + ++
Sbjct: 215  TNQLQKGKNAIGVLLGNGWYNHQSKAVWDFDRAPWRNRPAFCMDLRITYEDGTTEVIRSE 274

Query: 423  GEWRHALSPVLMSEIYAGEDHDLRLWPRGWAEPGFDDSGWSRVWTAPPPEGAPCALLSEP 482
             +W+ +   ++ + IY  E +D RL  +GW    FDDS W        P     +   +P
Sbjct: 275  RDWKTSSGALIFNSIYTAEHYDARLEQKGWNTADFDDSKWKEAGYRAVPSQNVVSQQVQP 334

Query: 483  IRETRVLKAASIRAVGPGRHIVDFGQNFAGRVRLRVKGAKGAPVIVRHAEILDGQGALDR 542
            IR    + A +++ V    ++ DF +N +G  R++V G +G  V ++H E L   G ++ 
Sbjct: 335  IRIVETIPAKALKKVNDTTYVFDFARNMSGVTRIKVSGEEGTVVRLKHGERLYDNGRVNM 394

Query: 543  RNLRVAR---------AEDRYILNGDDAPETLQPSFTYQGFRYAEIEG--VAGLDRDMID 591
             N+ V             D  IL+G    E     F Y+GFRY E+       L+++ + 
Sbjct: 395  SNIDVYHRPVDDKDPFQTDILILSGKGEDE-FMARFNYKGFRYVEVTSNKPVALNQNSLT 453

Query: 592  GVVLSSDLPEIGVFRTAEPLVQNLWLNSLWSQRSNFMGIPTDCPQRDERLGWTGDAQVFW 651
               + SD+P+ G   T+ PLV  LW  +  +  SN MG PTDCPQR E+ GWTGD     
Sbjct: 454  AYFVHSDVPQKGEINTSNPLVNRLWWATNNAYLSNLMGYPTDCPQR-EKNGWTGDGHFAI 512

Query: 652  ETAAFNMDVGGFTRGFARTLRDDQAPNGAYPMWSPSPRGLGWGTTTPTPGWADGGVMLPY 711
            ETA +N D       +    RD+Q PNG  P   P+  G G+GT      W     ++P+
Sbjct: 513  ETALYNYDGITVYEKWLADHRDEQQPNGVLPDIIPT-GGWGYGTDNGL-DWTSTIAIIPW 570

Query: 712  VAYLHSGDRSIVDENWTAMSAYVSGVLAENPDGLWRRGRGADFGDWLALDGKWPGDETTP 771
              YL  GD  ++ + +  +  YV  V   +P GL   GR    GDW+      P    + 
Sbjct: 571  NIYLFYGDSKLLADCYENIKRYVDYVDRTSPSGLTSWGR----GDWV------PVKSHSS 620

Query: 772  KDLIATAMLARSVDQLAQMAAWTGRSAEAKTWRGQADRIKAAFASAFV-RADGTVGNGSH 830
            K+L ++         LA  A    +  + K ++  A++I+ A    ++ R  G   +G  
Sbjct: 621  KELTSSVYFYVDTKILANAAKLFNKQEDYKHYQALAEKIRQAINDKYLNRETGIYASGVQ 680

Query: 831  TGYILALRLGLAPQPLRKAAGEHLAADIRRRGTLLSTGFLGTPLALDALADHGHAGLAFD 890
            T   + L  G+ P+ ++     +LA  +   G  L  G LG    L+AL+++G A  A+ 
Sbjct: 681  TELSVPLMWGIVPKDMKAKVARNLAKKVEEAGFHLDVGVLGAKAILNALSENGEAETAYK 740

Query: 891  LLLRTEYPSWGYMVRRGATTTWERWN-GDTGDVSMNSFNHYALGAICGFLYRRVAGV--E 947
            +  +  YPSWG  +  GATT  E W+   T D+   S NH   G I G+ Y+ + G+  +
Sbjct: 741  VAAQDTYPSWGCWIANGATTLLENWDLNATRDI---SDNHMMFGEIGGWFYKGLGGIFPD 797

Query: 948  PITPGFGAFRVAPLIDPRLRSAGATVDSVRGRIETDWRVTGDKAVLKVRVPANSRAEVVL 1007
            P  PGF    + P     L+   A   S  G I++ W       V  V +PANS A + +
Sbjct: 798  PQQPGFKHILLRPNFPSDLKQFEARHRSPYGEIQSQWERKKKSVVYSVTIPANSSATLYV 857

Query: 1008 PTLTR-----SLGAGDHT 1020
                +      L AG HT
Sbjct: 858  TDTVKGERVIELEAGKHT 875



 Score = 73.6 bits (179), Expect = 6e-17
 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 7/137 (5%)

Query: 24  ASQTSRWRAVGLRTAMRRQPLGIDDPQPMLSWRLEGPA-GAVQSAYQIMVASTAEKLHAG 82
           A +    + V L       PLGID+  P LSW L+    GA Q+AYQI+V++ + K +  
Sbjct: 20  AQKQEECKPVNLHCDHLINPLGIDNANPRLSWMLDDARQGARQTAYQIIVSTDSLKANNE 79

Query: 83  VADLWDSGRVKSSESVGVRYGGAPLKPRQRCVWRVRAWDAAGRASDWSPPATWEMGLIDQ 142
             ++W+SG+ K S+ + V Y    L+P  +  W+V  WD  G+ +  S   ++E G++  
Sbjct: 80  NGEIWNSGK-KESDQILVTYPEKNLQPFTKYYWKVNVWDKDGKKAT-SDINSFETGMMGM 137

Query: 143 SEWIGDWLAVEAADERD 159
             W G W+     D RD
Sbjct: 138 ENWQGAWI----GDNRD 150