Pairwise Alignments

Query, 735 a.a., CHASE4-family GGDEF/EAL protein from Caulobacter crescentus NA1000

Subject, 1487 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  311 bits (797), Expect = 2e-88
 Identities = 172/426 (40%), Positives = 260/426 (61%), Gaps = 10/426 (2%)

Query: 298  SEARAKHMAMHDALTGLPNRVLFEERLRQGVDGLSRRRGAMAVLAIDLDRFKAVNDTHGH 357
            +EA  + +A +D LTGLPNR LF  RL Q +    +    +A+L +DLDRFK VND++GH
Sbjct: 1048 TEADLRRLANYDVLTGLPNRSLFSSRLLQSIQTAQQTGEKLALLFLDLDRFKHVNDSYGH 1107

Query: 358  AAGDELIQVIGARLAGLCRASETLARLGGDEFGVVAAEIDPQGAAA-LAERLVAALAAPV 416
            + GD L+     RL     +   L R GGDEF ++    +       +AERL+A + AP 
Sbjct: 1108 SMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLRNANNLNEINHIAERLLAQIVAPF 1167

Query: 417  DLSCGTVFVGGSVGVAVITPDEAFVGAVEAARRADVAMYRAKDEGRGRYCFFEAEMDAAL 476
             L     ++  S+G++ I PD+A V      + AD+AMY AK+EGRG + ++ +E +A  
Sbjct: 1168 KLFGREFYISTSIGIS-IWPDDA-VQPEAFIKNADLAMYHAKEEGRGNFKYYSSERNAQA 1225

Query: 477  KARRGLEADLRLALKDGGVWVAYQPQVDA--AGKVLGVEALARWTHPEKGAISPGAFVPL 534
                 LEADLR A++     + YQPQ+D     K +G+EAL RW HP++G I P  F+ +
Sbjct: 1226 LYHLRLEADLRKAIEREEFELYYQPQIDILRGDKFIGMEALIRWRHPKEGYIRPDIFIKV 1285

Query: 535  AEDCGLIDELGRLIMRRAFTDSLRW-----KDLKVAVNVSALQMRQAGFPDLVAQILAET 589
            AE CGL+ E+ R + RRA  D  +W        K++VN+SA+  RQ  F + + +ILA+T
Sbjct: 1286 AEACGLVVEIDRWVFRRACLDGAKWVKRCAAPFKLSVNISAVHFRQPDFIEGLKKILADT 1345

Query: 590  GARAEKIELEITEGALLGDDEATHDAISRLREMGFSLALDDFGTGYSSLSYLRRYPIDKI 649
                  + LEITEG L+ + +A    +++L+E+G  +A+DDFGTGYSSL+YLR + ++ +
Sbjct: 1346 QMPTSSLGLEITEGVLMKEVQAAKSHLTQLKELGIEVAIDDFGTGYSSLAYLRHFDVNTL 1405

Query: 650  KIDRSFITPLGGDKEAGAVVAAIVRLAKALKLSVIAEGVETNQQREQLHEIGCVQAQGFL 709
            KIDRSF+  +  +    A+V++I+ LA+ LKL+V+AEGVET +Q EQ+   GC   QG+ 
Sbjct: 1406 KIDRSFLIDIATNSADQAIVSSIIELARNLKLTVVAEGVETVEQLEQVFSRGCYIVQGYY 1465

Query: 710  FSAALA 715
            F+  ++
Sbjct: 1466 FAKPMS 1471



 Score = 29.3 bits (64), Expect = 0.002
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 225 HRSDARPDADDAHVPLRNHAGQVVATLDWTPPHPGQR 261
           HR       D+    L NHA ++V TL+  P HP  R
Sbjct: 826 HRDTQSFYLDNRGAVLGNHANEIVVTLETLPVHPEDR 862