Pairwise Alignments

Query, 356 a.a., bacterial peptide chain Release factor 1 (RF-1) from Caulobacter crescentus NA1000

Subject, 351 a.a., peptide chain release factor 1 (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  428 bits (1101), Expect = e-125
 Identities = 216/350 (61%), Positives = 270/350 (77%), Gaps = 1/350 (0%)

Query: 3   LPQARLDQVLDRFREVEARMGAATDGAEIVKLSKEHAELRPVAEAVERLAKLSAERAELD 62
           +P  +L Q+ +RF  +EARM A   G +I  L +E+AEL+PV   +   ++  A+ AE +
Sbjct: 2   VPTEKLAQITERFEYIEARMAAGAAGEDIAALGREYAELKPVVAEIAAYSRARADLAEAE 61

Query: 63  VMASDPEMAEMVRDEIQALDEKLPVMERELALMLAPKDKDENASAILEVRAGTGGDEAAL 122
            M  DPEM  +  +EI AL  ++P ME+ L L L PKD  +   A++E+R GTGG+EAAL
Sbjct: 62  AMLDDPEMRALAEEEIPALKARIPEMEQALRLALLPKDAADARPAMIEIRPGTGGEEAAL 121

Query: 123 FAGDLFRMYQRYAQTQGWRVEIDSISEGEMGGFKEIVASITGDGVFGRLKFESGVHRVQR 182
           FAGDL RMYQRYA+ QGWR +I S S  E+GG KE++A ++G GVF +LK+ESGVHRVQR
Sbjct: 122 FAGDLLRMYQRYAEAQGWRFQIVSESLTELGGIKEVIAHVSGSGVFAKLKYESGVHRVQR 181

Query: 183 VPATEAQGRIHTSAATVAVLPEAEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAVRIT 242
           VP TE+ GRIHTSAATVAVLPEAE V+I+I  SD+RIDT R+SGAGGQHVN TDSAVRIT
Sbjct: 182 VPVTESGGRIHTSAATVAVLPEAEAVDIDIPASDIRIDTMRASGAGGQHVNTTDSAVRIT 241

Query: 243 HLPTGVVVTSSEKSQHQNRARAMKNLKARLYDMQREALDSARSEARKSQVGSGDRSERIR 302
           H+PTG+VVTSSEKSQH+NR  AM+ L+ARLYD++R+  D+ RS ARK QVGSGDRSERIR
Sbjct: 242 HIPTGLVVTSSEKSQHRNRDIAMQVLRARLYDLERQRADAERSAARKGQVGSGDRSERIR 301

Query: 303 TYNFPQGRVTDHRINLTLYNLARIMEGDALDDVINPLIAEDQAERLASLE 352
           TYNFPQGR+TDHRINLTLY L ++M+GD LD+VI  L A+DQA  LA +E
Sbjct: 302 TYNFPQGRMTDHRINLTLYKLDQVMQGD-LDEVIAALAADDQARLLAEVE 350