Pairwise Alignments

Query, 383 a.a., cytochrome bd-type quinol oxidase, subunit 2 cydB from Caulobacter crescentus NA1000

Subject, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Shewanella loihica PV-4

 Score =  402 bits (1032), Expect = e-116
 Identities = 195/374 (52%), Positives = 254/374 (67%), Gaps = 2/374 (0%)

Query: 6   DFATLRVIWWALVGILLIGFALTDGFDMGVGALLPFVAKTDEERRMVINTVGATWEGNQV 65
           D+  LR +WWAL+G+L IGFA+TDGFDMGVGALLP + K D ERR++IN++   W+GNQV
Sbjct: 3   DYEILRFVWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINSIAPHWDGNQV 62

Query: 66  WFILGGGAIFAAWPFVYAISFSGFYLAMFVVLTAMILRPVGFKYRSKRQDPRWRAFWDWA 125
           W I  GGA+FAAWP VYA+SFSGFY+AM +VL A+ LRPVGF YRSK +DPRWR  WDWA
Sbjct: 63  WLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALFLRPVGFDYRSKIEDPRWRKAWDWA 122

Query: 126 LFVGGFVPVLCFGVALGNVLQGAPFRLDSDLRAFYDGSFLGLFSPFALLCGLLSVSMLVL 185
           LFVGGFVP L  GVA GN+LQG PF  D  LRA Y G   GL +PF LL GL+SVSM+++
Sbjct: 123 LFVGGFVPPLIIGVAFGNLLQGVPFNFDEYLRATYHGGLFGLLNPFGLLAGLVSVSMIIM 182

Query: 186 HGAAWITVKGEEGPVAERARRIGELAGLASIVLFAAGGFWVAFGGMGFRIEGLADAAGPS 245
            GA+W+ +K  EG +  RA    ++A     VLF   G W+A G  G+ +    D  G S
Sbjct: 183 QGASWLQMK-TEGELRVRAATATQVAAALVAVLFTLAGVWLANGIDGYVVTSTIDTHGAS 241

Query: 246 NPLRGAAAVREPGAWLDNYGRHGWMILAPVLGFAGAALALLGLRAKSAWMAFTGSSASAV 305
           NP     AV E GAWL NY ++   +L P+LG A   LALL  R   +  AF  SS +  
Sbjct: 242 NPALKTVAV-EAGAWLANYDKYPVTMLFPILGIAMPVLALLASRFNRSGFAFLFSSLAVA 300

Query: 306 GIIATVGLSMFPFILPSSVDPRSSLTVWNASSSHLTLFIMLVVTIVFLPLVLAYTAWVYK 365
            +I T G +MFPF++PSS++P  SLT+W+A++SH+TL +M     +F+P+VL+YT W Y 
Sbjct: 301 MVILTCGAAMFPFVMPSSLEPNVSLTMWDATASHMTLTVMTWAAAIFVPIVLSYTIWTYF 360

Query: 366 VLWGRSTTAALAVN 379
            ++GR + + +  N
Sbjct: 361 KMFGRLSRSYIEDN 374