Pairwise Alignments

Query, 546 a.a., ABC transporter, ATP-binding protein cydD from Caulobacter crescentus NA1000

Subject, 588 a.a., ABC-type multidrug transport system, ATPase and permease components from Xanthomonas campestris pv. campestris strain 8004

 Score =  165 bits (417), Expect = 5e-45
 Identities = 175/552 (31%), Positives = 253/552 (45%), Gaps = 45/552 (8%)

Query: 23  RTVAPTVRR------ASLLAL-VDGVAAIAFAAGLALSVDAIAQGLGAASLAIWLAVAAL 75
           RT+ P V+R      A L+AL V   A ++  A +   +D    G    + A      AL
Sbjct: 18  RTLWPFVQRQRGLFAAWLVALAVSSAATLSLPAAVKRMIDHGFSGGTQINQAF-----AL 72

Query: 76  ALAVRGVLAMATG-------VLGARAAANAKAALRLTLSRAVFAG--PRRPAGEAATALV 126
             AV  VLA+AT        +LG +  A+ +  L   L   + AG   R  +GE  + L 
Sbjct: 73  LFAVAVVLALATAARFYFVALLGEKVVADLRGRLYAHLI-GLDAGFHDRSRSGELVSRLS 131

Query: 127 EGVEALDGHVARFLPTRLSAGVLPLLMIAAAAVASPIAAAIMLGTLIPFILAMILTGSAA 186
              E L G V   +   L + V  +  +    V SP  A   L  +   +L ++L     
Sbjct: 132 ADSELLRGVVGTTMSVALRSSVTVIGSLVMLFVTSPRLAGFTLIGIPLAVLPIVLGARRL 191

Query: 187 ASEARAQFQALERLSALFLDRVRALPVVLAFQAEGATTVALTRSASNLAERTIRVLRVAF 246
              +RA    +   + L  + + A+  V A   EG  +       S   +  I   RV  
Sbjct: 192 QKISRASQDRVADANTLAAETLGAVRTVQAHAREGYES----NRFSQALQAAIGTARVRI 247

Query: 247 LSSAALEFFAALSV--ALVAV-YCGFNLL---RLLPFPVPEQL--DLARAFFVLALAPEV 298
            + A +   A + +  A+VAV + G + +   ++ P  + + +   L     V ALA EV
Sbjct: 248 RTQATVTAVAIMLIFGAIVAVLWLGAHDVIAGQMTPGTLGQFVLYALIGGGSVGALA-EV 306

Query: 299 YAPMRRLAAAYHDRQAAEAASESLATFEAPPPCPARAPLAAAPSLRFDGVEIRYPDT-DA 357
           +  ++R A      +  E   E  A      P P   P+  A  + FD V   YP   D 
Sbjct: 307 WNELQRAAGGMG--RIGELLDEQSAIVAPATPQPLPVPVRGA--IHFDQVVFHYPQRPDM 362

Query: 358 PAVRDFDLVAPAGSITALVGTSGAGKSSILNALLGLAPVTGGAISVNDNPL--TD---IS 412
           PA+  FDL    G   ALVG SGAGKS++L  LL       G++ ++D  L  TD   + 
Sbjct: 363 PALDGFDLHVQPGETVALVGPSGAGKSTVLAMLLRFHDPLSGSVRIDDVDLRQTDPVLLR 422

Query: 413 SDAAWAGQSPLILPASIADNIALARRDASRAEIAEAAQRAGLGPALAVRPGGLDFVLDER 472
              A   Q P +  AS ADNI   R DAS A++  AA  A     L   P G    L ER
Sbjct: 423 EQIALVPQQPTLFAASAADNIRYGRLDASDAQVEAAATAAEADIFLRALPQGYASELGER 482

Query: 473 GSGLSGGERRRLSLARALLKPAPILLLDEPTANLDAEAEAAMIEAIREAAQGRTTLIATH 532
           G+ LSGG+++R+++ARALLK APILLLDE T+ LDA++E A+ +A+    QGRTTL+  H
Sbjct: 483 GTRLSGGQQQRVAIARALLKDAPILLLDEATSALDAQSERAVQQALDRLMQGRTTLVIAH 542

Query: 533 SEAVAALADKVV 544
             A    AD++V
Sbjct: 543 RLATVLKADRIV 554