Pairwise Alignments

Query, 532 a.a., ABC transporter, ATP-binding protein cydC from Caulobacter crescentus NA1000

Subject, 620 a.a., lipid ABC transporter ATPase/inner membrane protein (RefSeq) from Shewanella loihica PV-4

 Score =  112 bits (281), Expect = 3e-29
 Identities = 124/465 (26%), Positives = 201/465 (43%), Gaps = 63/465 (13%)

Query: 98  RALAAIRPAVFESLAAAPPTESLALSRGEASARLVQDVDAIETRFVRLSAPWSAAAGLGA 157
           R  A IR  V++ L    P     L  GE  +R   D   +++  V  S   +  A +  
Sbjct: 115 RVSADIRLKVYDHLLKLSPGFYARLRTGEVISRFTADATLLQS-VVGSSLSMALRASVTV 173

Query: 158 GVALALLAGWIPALSILTAASAATLLARAL--ARRYSAPARAAIQARTGALKDSVAALVS 215
              L ++A     L+ L   +   +L       R+    +R + Q R G L   V   + 
Sbjct: 174 VGGLVMMAITSLKLTALVLLAVPLVLGPIFFFGRKVRELSRKS-QDRVGDLGAYVDESLH 232

Query: 216 ASAELRAYGLADWAGETLNARAASLEDARRAAARAQGLIVASQSVIAGLAVAAAVACAAP 275
               ++AY   D   +  + R  ++ +A R   + + ++++    ++ LA+A      A 
Sbjct: 233 EIHTVQAYCHEDRDRQLFSERVEAVMEAARGRIKYRAILISLVMFLSILAIALITWVGAK 292

Query: 276 AGAALAALAG------LAAVMSLDALTSLAAAFDQDGAAHEARTRL--------DAVLRH 321
              + A   G        AVM   A+ +++    +   A  A  RL        D  L  
Sbjct: 293 DVMSEAITPGELSAFMFYAVMVAGAVATISEVIGEIQRAAGATERLIELVETPIDIPLAP 352

Query: 322 RPKAAPS----------------------------SPPGPQPLTLLGLTLRPGERLAVSG 353
           +P + P+                            +  G + +  L L + PGER+A+ G
Sbjct: 353 KPVSLPAKVRGELSLEQVRFSYPVQASADSAEEMEAQAGVEVIRGLSLHIAPGERVALVG 412

Query: 354 PSGCGKTTAIETL--LGLRESG----------SLTP---REAFAWLPQDAGLVAGTVRDN 398
            SG GK+T  E L    + +SG          SL P   R+ +A +PQ++ + A +V +N
Sbjct: 413 ASGAGKSTLFELLQRFYVLDSGVIALDGIDIASLRPQDLRQQYALVPQESVIFATSVLEN 472

Query: 399 LRLAAPTASDEDLWAALDDACLADRIRAAPEGLLAYVGDDGERLSGGERRRLALARAYLR 458
           +R   P AS E++ AA   A   + I    EG   Y+G+ G RLSGG+++R+A+ARA L 
Sbjct: 473 VRYGRPDASLEEVQAACVAARADEFIADFSEGYQTYLGERGVRLSGGQKQRIAIARAILA 532

Query: 459 DAPWLLLDEPTEGLDPVTEAAVVARLDARLQRTGQGLVLVSHRAA 503
           D P LLLDE T  LD V+E  V   LD  +Q  G+  ++++HR A
Sbjct: 533 DRPVLLLDEATSALDAVSEQKVKQALDVLMQ--GRTTLIIAHRLA 575