Pairwise Alignments

Query, 413 a.a., hypothetical protein from Caulobacter crescentus NA1000

Subject, 390 a.a., conserved hypothetical protein, putative transport protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 80.9 bits (198), Expect = 6e-20
 Identities = 108/417 (25%), Positives = 180/417 (43%), Gaps = 53/417 (12%)

Query: 8   MTEALRPVAKADRHLSLDVLRGLGVMGILAV-NAVAFGLPMPVYMSPELSPFGLAGAEAS 66
           MT+ L+     +R   +D LRG  ++ I+ + N   + L +P+  +    P  L   +  
Sbjct: 1   MTQTLKTT---ERLGVVDALRGFALLAIVLLHNLEHYNLFLPLDYT---LPAWLQTIDKY 54

Query: 67  AWWVVQTFFHYKFITLFSILFGVSILLVGGERTDKARGALLRRRLGW----LLVIGLLHG 122
           AW  +   F  K    FS+LFG S  +       + RG   R R  W    L +   LH 
Sbjct: 55  AWDTMFFLFAGKAYATFSLLFGFSFYIQF--HNAEKRGTDFRGRFAWRMCLLFLFAQLHA 112

Query: 123 LLIWFGDILLLYACTGFVALLARSWTPRRLFTVSLTILLLGS--ALAIAPLFLLESAPAE 180
           L  + GDILLLYA  GF  +       + +F ++  +LL       AI  +  LE  P+ 
Sbjct: 113 LF-YNGDILLLYAVVGFALIPVCKLKDKTVFWIAAILLLQPYEWGRAIYAMINLEYVPST 171

Query: 181 LQ----QKIIAEMNQPGSGVDVAAATAAMRGGLVAALGENFKS-WMILQPMSVIVFIWRT 235
                  K+  E+   GS  +V      +R  +    G+ + + W +         +++T
Sbjct: 172 GHFIPYYKLAQEVTSNGSFFEV------LRSNITD--GQMYSNIWQVENGR-----LFQT 218

Query: 236 GALMLLGMALFKTGFLTGKAKTWVYLLLIALGGAGLAWTGWESSMKLATDFAEPQATGRY 295
            AL + GM L +  +   K++  +      L GA LA+      +     F     T   
Sbjct: 219 AALFMFGMLLGRRKYFM-KSEESLRFWKKMLTGAILAFI----PLYCLKTFIPALITNPS 273

Query: 296 NMAYEFASLPITLGYASLAIL-----LIRSRAIAG-----LLNPVARLGQMAFTNYLTQS 345
            M     ++P    +A + IL     L+  +   G     LL P    G+M+ TNY++QS
Sbjct: 274 IMVPYKIAVPSYANFAFMVILVSVFTLLWFKKDTGYSWQSLLIPY---GRMSLTNYISQS 330

Query: 346 LIMTTIFWSGRGLGLFGEFNRVELWGCVIAIWALQLIWSPLWLSRFSMGPMEWIWRR 402
           ++  TI++ G GL ++            + I+ +QLI+S  WL+R   GP+E++WR+
Sbjct: 331 IMGVTIYY-GFGLSMYKYAGATGSLLIALLIFTIQLIFSRWWLARHKQGPLEFLWRK 386