Pairwise Alignments
Query, 387 a.a., hypothetical protein with pentapeptide repeats from Caulobacter crescentus NA1000
Subject, 245 a.a., pentapeptide repeat protein (RefSeq) from Dinoroseobacter shibae DFL-12
Score = 82.8 bits (203), Expect = 9e-21
Identities = 61/171 (35%), Positives = 78/171 (45%), Gaps = 26/171 (15%)
Query: 47 DLRGADLTGSDLSDARLEGVILEEAILFGALLERANLSLGRLQRADLRGANLRGAILDGA 106
DL GA+L G+DL DA L A+ GA LE A+L + A GA +RG + D
Sbjct: 83 DLAGAELAGADLRDA-----YLTYAVFDGANLEGADLRDAFMPFAQFSGARMRGILFDRT 137
Query: 107 DLRQVDFRSGKLAVADEASQFVMIRRDVSAARLESASITGATLDGARMDQVLMGEADLSE 166
+ R F + A L +AS+ G L A + + +G ADLS
Sbjct: 138 NARDTVF---------------------AGADLRAASMVGVALPRATLTEADLGGADLSG 176
Query: 167 CSLRGATMQGVRLKNARLRGADFSNANLAGADLRDADLTRAILVGTAIKGA 217
L GA RL A LR AD + A L GADL +ADLT A+ GA
Sbjct: 177 AFLEGANFGNARLVGAVLREADLTGARLTGADLSEADLTGAVTQAAGFSGA 227
Score = 76.3 bits (186), Expect = 9e-19
Identities = 73/218 (33%), Positives = 92/218 (42%), Gaps = 46/218 (21%)
Query: 151 GARMDQV--LMGEADLSECSLRGATMQGVRLKNARLRGADFSNANLAGADLRDADLTRAI 208
GA D V L+ + +C L GA + G L++A L A F ANL GADLRDA + A
Sbjct: 64 GADRDSVNALLADNQCRDCDLAGAELAGADLRDAYLTYAVFDGANLEGADLRDAFMPFA- 122
Query: 209 LVGTAIKGARIEGAIIEGVLTAPTPAAIEAAPTLRQALDSHRQWFATGGASGQVARLEGR 268
GAR+ G + + T A G
Sbjct: 123 ----QFSGARMRGILFDRTNARDTVFA-------------------------------GA 147
Query: 269 DLRP---LGTLLANSELTALKARGACLAGMVLAGAMLQGADLDEADLRGADLRGADLRGA 325
DLR +G L + LT A L G L+GA L+GA+ A L GA LR ADL GA
Sbjct: 148 DLRAASMVGVALPRATLTE-----ADLGGADLSGAFLEGANFGNARLVGAVLREADLTGA 202
Query: 326 SLRGANLSQADLREADLRNLGLETGRDLTTKLDGAMLR 363
L GA+LS+ADL A + G T + LR
Sbjct: 203 RLTGADLSEADLTGAVTQAAGFSGAVFCRTVMPDGTLR 240
Score = 63.9 bits (154), Expect = 4e-15
Identities = 67/201 (33%), Positives = 80/201 (39%), Gaps = 53/201 (26%)
Query: 179 LKNARLRGADFSNANLAGADLRDADLTRAILVGTAIKGARIEGAIIEGVLTAPTPAAIEA 238
L + + R D + A LAGADLRDA LT A+ G ++GA + A +
Sbjct: 74 LADNQCRDCDLAGAELAGADLRDAYLTYAVFDGANLEGADLRDAFMP------------- 120
Query: 239 APTLRQALDSHRQWFATGGASGQVARLEGRDLRPLGTLLANSELTALKARGACLAGMVLA 298
A+ G +R G L + AR AG L
Sbjct: 121 -----------------------FAQFSGARMR--GILFDRTN-----ARDTVFAGADLR 150
Query: 299 GAMLQGADLDEADLRGADLRGADLRGASLRGANLSQADLREADLRNLGLETGRDLTTKLD 358
A + G L A L ADL GADL GA L GAN A L A LR DLT
Sbjct: 151 AASMVGVALPRATLTEADLGGADLSGAFLEGANFGNARLVGAVLRE------ADLT---- 200
Query: 359 GAMLRYADLREAKRSGNWPQA 379
GA L ADL EA +G QA
Sbjct: 201 GARLTGADLSEADLTGAVTQA 221
Score = 59.7 bits (143), Expect = 8e-14
Identities = 49/134 (36%), Positives = 63/134 (47%), Gaps = 26/134 (19%)
Query: 277 LANSELTALKARGACLAGMVLAGAMLQGADLDEADL------------------------ 312
LA +EL R A L V GA L+GADL +A +
Sbjct: 84 LAGAELAGADLRDAYLTYAVFDGANLEGADLRDAFMPFAQFSGARMRGILFDRTNARDTV 143
Query: 313 -RGADLRGADLRGASLRGANLSQADLREADLRNLGLETGRDLTTKLDGAMLRYADLREAK 371
GADLR A + G +L A L++ADL ADL LE +L GA+LR ADL A+
Sbjct: 144 FAGADLRAASMVGVALPRATLTEADLGGADLSGAFLEGANFGNARLVGAVLREADLTGAR 203
Query: 372 RSG-NWPQADTTGA 384
+G + +AD TGA
Sbjct: 204 LTGADLSEADLTGA 217
Score = 58.2 bits (139), Expect = 2e-13
Identities = 55/188 (29%), Positives = 76/188 (40%), Gaps = 46/188 (24%)
Query: 37 DLRGLDLSHRDLR----------GADLTGSDLSDARLEGVILEEAILFGALLERANLSLG 86
DL G +L+ DLR GA+L G+DL DA + A + G L +R N
Sbjct: 83 DLAGAELAGADLRDAYLTYAVFDGANLEGADLRDAFMPFAQFSGARMRGILFDRTNARDT 142
Query: 87 RLQRADLRGANLRGAILDGADLRQVDFRSGKLAVADEASQFVMIRRDVSAARLESASITG 146
ADLR A++ G L A L + D L A ++G
Sbjct: 143 VFAGADLRAASMVGVALPRATLTEAD--------------------------LGGADLSG 176
Query: 147 ATLDGARMDQVLMGEADLSECSLRGATMQGVRLKNARLRGADFSNANLAGADLRDADLTR 206
A L+G A+ L GA ++ L ARL GAD S A+L GA + A +
Sbjct: 177 AFLEG----------ANFGNARLVGAVLREADLTGARLTGADLSEADLTGAVTQAAGFSG 226
Query: 207 AILVGTAI 214
A+ T +
Sbjct: 227 AVFCRTVM 234
Score = 54.7 bits (130), Expect = 3e-12
Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 53/193 (27%)
Query: 133 DVSAARLESASITGATLDGARMDQVLMGEADLSECSLRGATMQGVRLKNARLRGADFSNA 192
+++ A L A +T A DGA ++ + +A + GA M+G+ R F+ A
Sbjct: 88 ELAGADLRDAYLTYAVFDGANLEGADLRDAFMPFAQFSGARMRGILFDRTNARDTVFAGA 147
Query: 193 NLAGADLRDADLTRAILVGTAIKGARIEGAIIEGVLTAPTPAAIEAAPTLRQALDSHRQW 252
+L A + L RA L + GA + GA +E
Sbjct: 148 DLRAASMVGVALPRATLTEADLGGADLSGAFLE--------------------------- 180
Query: 253 FATGGASGQVARLEGRDLRPLGTLLANSELTALKARGACLAGMVLAGAMLQGADLDEADL 312
GA+ ARL +G +L ++LT GA L GADL EADL
Sbjct: 181 ----GANFGNARL-------VGAVLREADLT---------------GARLTGADLSEADL 214
Query: 313 RGADLRGADLRGA 325
GA + A GA
Sbjct: 215 TGAVTQAAGFSGA 227
Score = 50.1 bits (118), Expect = 7e-11
Identities = 32/74 (43%), Positives = 41/74 (55%)
Query: 33 MRFHDLRGLDLSHRDLRGADLTGSDLSDARLEGVILEEAILFGALLERANLSLGRLQRAD 92
+R + G+ L L ADL G+DLS A LEG A L GA+L A+L+ RL AD
Sbjct: 149 LRAASMVGVALPRATLTEADLGGADLSGAFLEGANFGNARLVGAVLREADLTGARLTGAD 208
Query: 93 LRGANLRGAILDGA 106
L A+L GA+ A
Sbjct: 209 LSEADLTGAVTQAA 222
Score = 48.5 bits (114), Expect = 2e-10
Identities = 43/143 (30%), Positives = 58/143 (40%), Gaps = 31/143 (21%)
Query: 82 NLSLGRLQRADLRGANLRGAILDGADLRQVDFRSGKLAVADEASQFVMIRRDVSAARLES 141
+L+ L ADLR A L A+ DGA+L D R A +
Sbjct: 83 DLAGAELAGADLRDAYLTYAVFDGANLEGADLRD---------------------AFMPF 121
Query: 142 ASITGATLDGARMDQVLMGEADLSECSLRGATMQGVRLKNARLRGADFSNANLAGADLRD 201
A +GA + G D+ + + LR A+M GV L A L ADL
Sbjct: 122 AQFSGARMRGILFDRTNARDTVFAGADLRAASMVGVALPRA----------TLTEADLGG 171
Query: 202 ADLTRAILVGTAIKGARIEGAII 224
ADL+ A L G AR+ GA++
Sbjct: 172 ADLSGAFLEGANFGNARLVGAVL 194
Score = 38.5 bits (88), Expect = 2e-07
Identities = 30/69 (43%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 283 TALKARGACLAGMVLAG------AMLQGADLDEADLRGADLRGADLRGASLR-----GAN 331
TAL ACLA A+L + DL GA+L GADLR A L GAN
Sbjct: 49 TALGVALACLALPATGADRDSVNALLADNQCRDCDLAGAELAGADLRDAYLTYAVFDGAN 108
Query: 332 LSQADLREA 340
L ADLR+A
Sbjct: 109 LEGADLRDA 117
Score = 36.2 bits (82), Expect = 1e-06
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 38 LRGLDLSHRDLRGADLTGSDLSDARLEGVILEEAILFGALLERANLSLGRLQ 89
L G L DL GA LTG+DLS+A L G + + A GA+ R + G L+
Sbjct: 189 LVGAVLREADLTGARLTGADLSEADLTGAVTQAAGFSGAVFCRTVMPDGTLR 240
Score = 27.3 bits (59), Expect = 5e-04
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 12 LSQAAVAHARFRQGEGGRRLI---MRFHDLRGLDLSHRDLRGADLTGSDLSDARLEGVIL 68
LS A + A F G RL+ +R DL G L+ DL ADLTG+ A G +
Sbjct: 174 LSGAFLEGANF----GNARLVGAVLREADLTGARLTGADLSEADLTGAVTQAAGFSGAVF 229
Query: 69 EEAIL 73
++
Sbjct: 230 CRTVM 234