Pairwise Alignments

Query, 293 a.a., RDD family membrane protein from Caulobacter crescentus NA1000

Subject, 299 a.a., Predicted membrane protein/domain from Sphingomonas koreensis DSMZ 15582

 Score =  261 bits (666), Expect = 2e-74
 Identities = 152/292 (52%), Positives = 177/292 (60%), Gaps = 25/292 (8%)

Query: 12  TRAFVTPEGVDLRLELGEAGQRAGAFLLDAAIIIGVLVAATLLLGLLGIGAI---GAMGR 68
           TRA VTPEGV L L L  AG RAGAF +DA I++ VL+A T        GAI   G+ G 
Sbjct: 19  TRALVTPEGVTLHLRLATAGARAGAFTIDALIMLAVLIALTA-------GAITLWGSTGS 71

Query: 69  GGAEMMAVIWLLGFFLLRNFYFVGFELSAAAATPGKRAMGLRVAARDGGRLRPAAIFARN 128
           GG    A+IWLLGFFLLRNFYF  FE    AATPGKRA+ LRV ARDGGRL   AI ARN
Sbjct: 72  GGPA--AIIWLLGFFLLRNFYFTLFESGTRAATPGKRALKLRVVARDGGRLTGGAILARN 129

Query: 129 AMRELEVFLPLSILPAPQGDGGVESWAILLGFIWAGIFVFFPLFNADRLRVGDLVGGTWV 188
            MRE+EVFLPL  L   Q +G    W  LLG  W  IF+F PLFN DRLR GDL+ GTWV
Sbjct: 130 LMREVEVFLPLIFLMVAQAEGFSNRWLGLLGLGWTAIFMFMPLFNRDRLRAGDLIAGTWV 189

Query: 189 VRTPKQSLVRD-MADDGAERLARYDFTQAQIDAYGAKELHVLEDVLRQRDRKTMRAVAAR 247
           V   +  +  D +A +  + +  Y FT  +++ YG  E+  LE+VL + D  T+  VA  
Sbjct: 190 VENERPKIAPDLLAANDRDAIDAYGFTPQELETYGQFEIQRLEEVLHRNDPDTLTTVACV 249

Query: 248 IARKI-------DWTHGAIDDDHDFLSAYYAALRKRLEARLLMGVRRRDKHD 292
           I RKI        W H     D DFL AYYAA R  LE RLL G R+RDK D
Sbjct: 250 IRRKIGRRDEGVTWGH-----DRDFLEAYYAAARLHLERRLLFGQRKRDKFD 296