Pairwise Alignments

Query, 308 a.a., transposase, IS2 family from Caulobacter crescentus NA1000

Subject, 276 a.a., TRm1b transposase from Sinorhizobium meliloti 1021

 Score = 73.2 bits (178), Expect = 7e-18
 Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 15/253 (5%)

Query: 37  RYRSRRP-PDTELRERLRGLAAERRRFGYRRLFVLLRREGELSGKN-----RIYRLYREE 90
           R R R P PD EL E ++ + A+   +GYRR+  +LRR     G++     R+YR+ +  
Sbjct: 25  RARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAILRRNARKLGRSWPNAKRVYRVMKLH 84

Query: 91  GLTVRKRRARRRAIGTRAPILVEAKANARWSLDFVHDQFAGGRRFRVLNVVDDVTRECLA 150
            L + +             + VE ++N RW  D          + RV   +D   RE +A
Sbjct: 85  NLLLVRHTGAVDNRLHEGQVAVE-RSNIRWCSDGFEIGCDNKEKVRVAFALDCCDREAIA 143

Query: 151 AIPDTSISGRRVAREL--SALIARRGRPGMI------VSDNGTEFTSTAILAWAEDHRVA 202
            +  T     +  ++L  +A+  R GR  M+      ++DNG+ F +    +   D  + 
Sbjct: 144 HVATTEGIKSQDVQDLVITAVENRFGRINMLSEPIEWLTDNGSCFIAKDTASLLRDIGME 203

Query: 203 WHYIAPGKPTQNGFVESFNGRMRDELLNETLFFGLDHARQKLAAWAEDYNTRRPHSSIGY 262
                   P  NG  E+F    + + +        +    +L  W E YN   PHS++GY
Sbjct: 204 PCTTPVRSPQSNGMAEAFVKTFKRDYVAVNPTPDAETVMAQLPFWFEHYNNLHPHSALGY 263

Query: 263 QTPAAYAAHLNAT 275
           Q+P  + +  + T
Sbjct: 264 QSPREFISSQSQT 276