Pairwise Alignments

Query, 308 a.a., transposase, IS2 family from Caulobacter crescentus NA1000

Subject, 276 a.a., TRm1b transposase from Sinorhizobium meliloti 1021

 Score = 75.1 bits (183), Expect = 2e-18
 Identities = 69/277 (24%), Positives = 120/277 (43%), Gaps = 16/277 (5%)

Query: 14  LRTVFE-ISERRACSIVKADRKMVRYRSRRP-PDTELRERLRGLAAERRRFGYRRLFVLL 71
           ++TV E +   R+    +A     R R R P PD EL E ++ + A+   +GYRR+  +L
Sbjct: 1   MKTVCETLGVARSNIAARAAGSPSRARGRPPLPDRELVEDIKAVIADMPTYGYRRVHAIL 60

Query: 72  RREGELSGKN-----RIYRLYREEGLTVRKRRARRRAIGTRAPILVEAKANARWSLDFVH 126
           RR     G++     R+YR+ +   L + +             + VE ++N RW  D   
Sbjct: 61  RRNARKLGRSWPNAKRVYRVMKLHNLLLVRHTGAVDDRLHEGQVAVE-RSNIRWCSDGFE 119

Query: 127 DQFAGGRRFRVLNVVDDVTRECLAAIPDTSISGRRVAREL--SALIARRGRPGMI----- 179
                  + RV   +D   RE +A +  T     +  ++L  +A+  R GR  M+     
Sbjct: 120 IGCDNKEKVRVAFALDCCDREAIAHVATTEGIKSQDVQDLVITAVENRFGRINMLSEPIE 179

Query: 180 -VSDNGTEFTSTAILAWAEDHRVAWHYIAPGKPTQNGFVESFNGRMRDELLNETLFFGLD 238
            ++DNG+ F +    +   D  +         P  NG  E+F    + + ++       +
Sbjct: 180 WLTDNGSCFVARDTASLLRDIGMEPCTTPVRSPQSNGMAEAFVKTFKRDYVSVNPTPDAE 239

Query: 239 HARQKLAAWAEDYNTRRPHSSIGYQTPAAYAAHLNAT 275
               +L  W E YN   PHS++GYQ+P  + +  + T
Sbjct: 240 TVMAQLPFWFEHYNNLHPHSALGYQSPREFISSQSQT 276