Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1406 a.a., DNA-directed RNA polymerase subunit beta' from Rahnella sp. WP5

 Score = 1607 bits (4162), Expect = 0.0
 Identities = 831/1369 (60%), Positives = 1032/1369 (75%), Gaps = 21/1369 (1%)

Query: 3    QEVLNIFNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARI 62
            +++L           FD I+I+LASP+ IRSWSFGE+KKPETINYRTFKPERDGLFCARI
Sbjct: 2    KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61

Query: 63   FGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLP 122
            FGP KDYECLCGKYKR+K++G+ICEKCGVEVT  +VRRERMGHIELASP AHIWFLKSLP
Sbjct: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121

Query: 123  SRIAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTAEI 182
            SRI ++LDMPL+DIERVLYFE Y+V E G+T L++ Q+L+E+ Y+ A EE+GD+ F A++
Sbjct: 122  SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDE-FDAKM 180

Query: 183  GAEAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMVLT 242
            GAEAIQ LLK +DLE E E+LREEL+ T S+ K+KK +KR+K+LEAF +SGN+PEWM+LT
Sbjct: 181  GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 243  VVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQ 302
            V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L APDII+RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 303  ESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE 362
            E+VDAL DNGRRGR ITG+NKRPLKSLADM+KGKQGRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 363  LKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIREHP 422
            L+LH+CGLPKKMALELFKPFIY +L+ +GL+ T+K +K+MVERE+  VWDIL+EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 423  VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA 482
            VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 483  RVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMDAG 542
            R LMMSTNNILSPANG PIIVPSQD+VLGLYY++       GEG +     E E     G
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRGG 540

Query: 543  VVSLHAKIKARHTE--MTPEGVLLRK--VIDTTPGRMKIAALLPHHPQIGHRLIEKALTK 598
            + SLHA++K R TE     EG +  K  +IDTT GR  +  ++P    +   ++ + L K
Sbjct: 541  LASLHARVKVRITEEIKNTEGEVTHKTSIIDTTVGRAILWMIVP--KGLPFSIVNQPLGK 598

Query: 599  KEIGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETR 658
            K I  +++  YR  G K TVIFAD++M  GF  AA++G S G DD++IP +K  I+EE  
Sbjct: 599  KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAE 658

Query: 659  KLAEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAELQMKH-KDENG---REKE 714
                E ++Q+  GL+T GE+YNKV+D WA A +RVA  MM  L ++   + +G   ++  
Sbjct: 659  TEVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVS 718

Query: 715  INAIYMMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTHG 774
             N+I+MMA SGARGS AQ++QL GMRGLMAKP G IIETPI +NF+EGL V +YF STHG
Sbjct: 719  FNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778

Query: 775  ARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGSR 834
            ARKGLADTALKTANSGYLTRRLVDVAQD ++ E+DCGT +GI +  V+EGGDV   L  R
Sbjct: 779  ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRER 838

Query: 835  VLGRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGAC 894
            VLGR TAED+  PGT +++VP +T + E   D +E   V SVKVRSV++CE   GVC  C
Sbjct: 839  VLGRVTAEDILKPGTADILVPRNTLLHEKTCDLLEENSVDSVKVRSVVSCETDFGVCANC 898

Query: 895  YGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTA-QVAEQSFFEASNEGTV 953
            YGRDLARG  +N GEA+GVIAAQSIGEPGTQLTMRTFHIGG A + A +S  +  N GT+
Sbjct: 899  YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNTGTI 958

Query: 954  RVIG-PTVVGSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQRLG 1011
            ++     V  S+G LVI SRNT + ++ + G+ +E+YK PYG+ +   DG  V  G+ + 
Sbjct: 959  KLSNHKHVSNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMGKGDGASVNGGETVA 1018

Query: 1012 DWDPYTTPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVAD-WRTSARGSDLRPAM 1070
            +WDP+T P+I+EV+G IR  D+VD  +I  + D+ TG++  VV D    +  G DLRPA+
Sbjct: 1019 NWDPHTMPVISEVSGFIRFADMVDTQTITRQTDDLTGLSSLVVLDSAERTGSGKDLRPAL 1078

Query: 1071 GVLSEDGSYKRL-SNGGEARYLLSAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGL 1129
             ++   G    +      A+Y L   AI+ + DG ++  G+ +ARIP E   T+DITGGL
Sbjct: 1079 KIVDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGTQIHSGDTLARIPQESGGTKDITGGL 1138

Query: 1130 PRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKG 1189
            PRVA+LFEARRPK+ A++AE+ G + FGK+ K KRR+ I+P    DG+  +A E +IPK 
Sbjct: 1139 PRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISP---LDGS--DAYEEMIPKW 1193

Query: 1190 KHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHI 1249
            + + V +G+ + +G+ + DG   PHDILR+ GV A+  ++ +E+QEVYRLQGV INDKHI
Sbjct: 1194 RQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHI 1253

Query: 1250 ETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKAS 1309
            E IVRQML+K  I+  G T  ++G+  +         +  A G   A     LLGITKAS
Sbjct: 1254 EVIVRQMLRKGTIVSAGGTDFLEGEQAEMSRVKIANRQLEAEGKITATFTRDLLGITKAS 1313

Query: 1310 LQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTG 1358
            L T+SFISAASFQETTRVLTEA+V GK D L GLKENVIVGRLIPAGTG
Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362