Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1413 a.a., DNA-directed RNA polymerase subunit beta' from Phaeobacter inhibens DSM 17395

 Score = 1925 bits (4988), Expect = 0.0
 Identities = 958/1396 (68%), Positives = 1144/1396 (81%), Gaps = 7/1396 (0%)

Query: 1    MNQEVLNI-FNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFC 59
            MNQE+ N  FNP+     FD+I++SLASPE+I SWS+GEIKKPETINYRTFKPERDGLFC
Sbjct: 1    MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC 60

Query: 60   ARIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLK 119
            ARIFGP KDYECLCGKYKRMKY+G++CEKCGVEVTL +VRRERMGHIELASPVAHIWFLK
Sbjct: 61   ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK 120

Query: 120  SLPSRIAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFT 179
            SLPSRI +MLDM L+D+ERVLYFE Y+V EPGLT L   Q+++E++YM AQ+++G D+FT
Sbjct: 121  SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDQFGMDAFT 180

Query: 180  AEIGAEAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWM 239
            A IGAEAI+ +L AIDLE EAE LR EL+    ++K KK  KRLK++E+F ESGNRPEWM
Sbjct: 181  ANIGAEAIREMLAAIDLEAEAEHLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWM 240

Query: 240  VLTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR 299
            V+TV+PVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDII+RNEKR
Sbjct: 241  VMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR 300

Query: 300  MLQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVV 359
            MLQESVDALFDNGRRGRVITGANKRPLKSL+DMLKGKQGRFRQNLLGKRVD+SGRSVIV 
Sbjct: 301  MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT 360

Query: 360  GPELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIR 419
            GPELKLH+CGLPKKMALELFKPFIY+RL+AKGLS TVKQ+K++VE+E+P+VWDIL+EVIR
Sbjct: 361  GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR 420

Query: 420  EHPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ 479
            EHPV+LNRAPTLHRLGIQAFEP LIEGKAIQLHPLVC+AFNADFDGDQMAVHVPLSLEAQ
Sbjct: 421  EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ 480

Query: 480  LEARVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAM 539
            LEARVLMMSTNN+LSPANG PIIVPSQD++LGLYY+++ R+G PGEGKIF  + E++ A+
Sbjct: 481  LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYVTLEREGMPGEGKIFGTIDEVQHAL 540

Query: 540  DAGVVSLHAKIKARHTEMTPEGVLLRKVIDTTPGRMKIAALLPHHPQIGHRLIEKALTKK 599
            DAG V LH KI AR T++  EG  + K  +TTPGR+++ ALLP + +    L+ + L KK
Sbjct: 541  DAGEVHLHTKITARITQIDEEGNEVLKRFETTPGRVRLGALLPKNVKAPFELVNRLLRKK 600

Query: 600  EIGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETRK 659
            E+  +ID VYR+CGQK +VIF D++M +GF+EA KAGISFGKDD++IP  K  +V+ETR 
Sbjct: 601  EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWTLVDETRD 660

Query: 660  LAEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAELQMKHKDENGREKEINAIY 719
              +++EQQY DGLIT+GEKYNKVVDAW+K  D+V D MM  +    ++E G   E N++Y
Sbjct: 661  QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTDAMMGTISADKRNEAGAVMEPNSVY 720

Query: 720  MMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTHGARKGL 779
            MMAHSGARGS  QMKQLGGMRGLMAKP+G+IIETPI+SNFKEGLTV EYFNSTHGARKGL
Sbjct: 721  MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL 780

Query: 780  ADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGSRVLGRF 839
            +DTALKTANSGYLTRRLVDVAQDCI+ + DCGT   IT  A V  G+V+ SLG R+LGR 
Sbjct: 781  SDTALKTANSGYLTRRLVDVAQDCIVRDRDCGTEAAITAEAAVNDGEVVASLGERILGRV 840

Query: 840  TAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGACYGRDL 899
             AED+K PGT E++V     IDE +ADA+E A VQS ++RS LTCEA+ GVC  CYGRDL
Sbjct: 841  AAEDIKKPGTEEIIVAVGQLIDERMADAVEEAGVQSTRIRSPLTCEAEEGVCAQCYGRDL 900

Query: 900  ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAEQSFFEASNEGTVRVIGP- 958
            ARGT VN GEAVG+IAAQSIGEPGTQLTMRTFHIGG AQ  +QSF EAS EG +    P 
Sbjct: 901  ARGTQVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIVFEMPQ 960

Query: 959  TVVGSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQRLGDWDPYT 1017
            T+  ++G  +++ RN  + +  + G+ER ++K  YG++L VK+G  V RG +L +WDPYT
Sbjct: 961  TLENANGETLVVGRNMKLIIQDEHGEERASHKLGYGSKLFVKEGQSVARGDKLFEWDPYT 1020

Query: 1018 TPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVADWRTSARGSDLRPAMGVLSEDG 1077
             PII E  G  +  DLV G+++R+E DEATG+ Q++V DWR + +GSDL+P + ++  DG
Sbjct: 1021 LPIIAEKPGTAKYVDLVSGIAVRDETDEATGMTQKIVIDWRAAPKGSDLKPEIILVDGDG 1080

Query: 1078 SYKRLSNGGEARYLLSAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGLPRVAELFE 1137
               R   G    Y +S  AILSV +G ++  G+V+ARIP EGAKT+DITGGLPRVAELFE
Sbjct: 1081 EPVRSDAGNPLTYPMSVDAILSVEEGQQIMAGDVVARIPREGAKTKDITGGLPRVAELFE 1140

Query: 1138 ARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKGKHIAVHDG 1197
            ARRPKD A+IAE+DG V FG+DYKNKRRI I P   AD +  E VE+++PKGKHI V +G
Sbjct: 1141 ARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEP---ADESM-EPVEYMVPKGKHIPVQEG 1196

Query: 1198 DYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHIETIVRQML 1257
            D++ KG+YI+DGNP PHDIL I+GVEALAN+++DE+Q+VYRLQGV INDKHIE IVRQML
Sbjct: 1197 DFVQKGDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQML 1256

Query: 1258 QKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKASLQTKSFIS 1317
            QK EI + GDT L+KG+H+DK EFD   EKA++RG RPA  +P+LLGITKASLQT+SFIS
Sbjct: 1257 QKWEISDSGDTTLLKGEHVDKQEFDTANEKALSRGKRPAQGEPILLGITKASLQTRSFIS 1316

Query: 1318 AASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTGSYLRSLQRVAAKRDEQLAQ 1377
            AASFQETTRVLTEASV GK D L GLKENVIVGRLIPAGTG   + ++ +A  RD  + +
Sbjct: 1317 AASFQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQRVRNIAQGRDNVVLE 1376

Query: 1378 QREDAMEPLPAEIALS 1393
             R +  E   A  A S
Sbjct: 1377 ARREEAEAAAALAAPS 1392