Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1428 a.a., DNA-directed RNA polymerase subunit beta' from Pedobacter sp. GW460-11-11-14-LB5

 Score = 1298 bits (3360), Expect = 0.0
 Identities = 709/1441 (49%), Positives = 949/1441 (65%), Gaps = 105/1441 (7%)

Query: 18   FDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFGPTKDYECLCGKYK 77
            F  I ISL+SPE I   S GE+ KPETINYRT+KPERDGLFC RIFGP KDYEC CGKYK
Sbjct: 13   FTSITISLSSPEIILERSSGEVLKPETINYRTYKPERDGLFCERIFGPVKDYECHCGKYK 72

Query: 78   RMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLPSRIAMMLDMPLKDIE 137
            R++YKGI+C++CGVEVT  +VRRERMGHI L  PVAHIW+ +SLP++I  +L +P K ++
Sbjct: 73   RIRYKGIVCDRCGVEVTEKKVRRERMGHIALVVPVAHIWYFRSLPNKIGYLLGLPTKKLD 132

Query: 138  RVLYFEYYIVTEPGLTP---LKQHQLLSEDDYMRA------QEEYGDDS----FTAEIGA 184
             ++Y+E Y+V + GL     +     L+E++Y+        + +Y DD     F A++GA
Sbjct: 133  LIIYYERYVVIQSGLMAEEGINYMDFLTEEEYLDILDKLPKENQYLDDKDPNKFIAKMGA 192

Query: 185  EAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESG----NRPEWMV 240
            EA+++LLK IDL+  +  LR + +   S  ++ +  KRL+++EAF+ +     NRPEWM+
Sbjct: 193  EALEDLLKRIDLDTLSYDLRHQAANETSQQRKNEALKRLQVVEAFRGANTRIENRPEWMI 252

Query: 241  LTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM 300
            + +VPVIPPELRPLVPL+GGRFATSDLNDLYRRVI RNNRLKRLIE++AP++I+RNEKRM
Sbjct: 253  VKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPEVILRNEKRM 312

Query: 301  LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG 360
            LQE+VD+LFDN R+   +     R LKSL+D+LKGKQGRFRQNLLGKRVDYS RSVIVVG
Sbjct: 313  LQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKRVDYSARSVIVVG 372

Query: 361  PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIRE 420
            P LKLHECG+PK MA EL+KPFI  ++  +G+  TVK +K++V+R+ P VWDILE V++ 
Sbjct: 373  PSLKLHECGIPKDMAAELYKPFIIRKMIERGVVKTVKSAKKIVDRKDPLVWDILENVLKG 432

Query: 421  HPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL 480
            HPVLLNRAPTLHRLGIQAF+PKLIEGKAIQLHPLVC AFNADFDGDQMAVH+PL   A L
Sbjct: 433  HPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLGNAAIL 492

Query: 481  EARVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGE-----PGEGKIFADLGEI 535
            EA+VLM++ +NIL+PANG PI VPSQD+VLGLYY++  R  +      G+   F    E+
Sbjct: 493  EAQVLMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDETRVVKGQDSAFYSPEEV 552

Query: 536  EAAMDAGVVSLHAKIKARHTEMTPEGVLLRKVIDTTPGRMKIAALLPHHPQIGHRLIEKA 595
              A +   + LHA IK R      +G ++ K+ +TT GR+    ++P   ++G+  I + 
Sbjct: 553  IIAYNEKELDLHAFIKVRVNVKQADGSIVNKLTETTVGRVLFNQMVPE--EVGY--INEL 608

Query: 596  LTKKEIGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVE 655
            LTKK + ++I  V +  G      F D +  LGFK A + G+SF   D+ IPV K  ++E
Sbjct: 609  LTKKSLRDIIGEVVKMTGMARASQFLDDIKELGFKMAFQGGLSFNLQDVNIPVEKHTLLE 668

Query: 656  ETRKLAEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAELQMKHKDENGREKEI 715
            +     EE    Y  G IT  E+YN+++D W +  +R+   +M +L     D  G     
Sbjct: 669  QAAAEVEEVRNNYNMGFITNNERYNQIIDIWTRINNRLTTFVMTQLS---SDNQG----F 721

Query: 716  NAIYMMAHSGARGSQAQMKQLGGMRGLMAKP-----SGEIIETPIVSNFKEGLTVQEYFN 770
            N++YMM  SGARGS+ Q++QL GMRGLMAKP      G+IIE PI+SNFKEGL+V EYF 
Sbjct: 722  NSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGDIIENPILSNFKEGLSVLEYFI 781

Query: 771  STHGARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVS 830
            STHGARKGLADTALKTA++GYLTRRL DVAQD I+ + DCGT +G+   A+ +  D++  
Sbjct: 782  STHGARKGLADTALKTADAGYLTRRLHDVAQDMIVNDNDCGTLRGMYTTALKDQEDIVEP 841

Query: 831  LGSRVLGRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGV 890
            L  R+LGR +  DV +P    L+V A   I+E++A  IE + ++ +++RSVLTCE+K GV
Sbjct: 842  LYDRILGRTSLHDVYNPLDNTLLVGAGEDINEDVAKLIEESPLEGIEIRSVLTCESKRGV 901

Query: 891  CGACYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTA-QVAEQSFFEASN 949
            C  CYGR+LA G  V  GEAVGVIAAQSIGEPGTQLT+RTFH+GGTA  +A +S   A  
Sbjct: 902  CALCYGRNLASGKRVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESNIVAKF 961

Query: 950  EGTVRVIGPTVVGS---DGAL-VIMSRNTSVSVLVDGKER--ETYKPPYGARLRVKDGDL 1003
            +G +       V +   +G + V++ R+    ++  G  R   T   PYGA L VK+GD 
Sbjct: 962  DGVIEFENIRTVDTQTEEGTVQVVLGRSGEFKIVEPGTGRIIVTNNIPYGAFLFVKEGDK 1021

Query: 1004 VKRGQRLGDWDPYTTPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVADWRTSARG 1063
            + +G ++  WDPY   I++E AGK + + +++G++ REE DE TG  ++V+ D R   + 
Sbjct: 1022 LSKGDKICSWDPYNAVILSEFAGKAQFDAIIEGVTFREESDEQTGHREKVIIDTRDKTK- 1080

Query: 1064 SDLRPAMGVLSEDGSYKRLSNGGEARYLLSAGAILSVADGDEVKPGEVIARIPTEGAKTR 1123
                P++ ++ + G   +        Y +  GA +SV +G+ ++ G++IA+IP    KTR
Sbjct: 1081 ---NPSVQIVDKKGEMIK-------GYNIPVGAHVSVDEGEAIQTGQIIAKIPRATGKTR 1130

Query: 1124 DITGGLPRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVE 1183
            DITGGLPRV ELFEAR P + AV+ E+DG V  G   +  R I I      +    E  +
Sbjct: 1131 DITGGLPRVTELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITI------ESKDGEVKK 1184

Query: 1184 FLIPKGKHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVP 1243
            +L+P  KHI V D D++  G  + DG+  P DIL I G  A+  +LV+ IQEVYRLQGV 
Sbjct: 1185 YLVPLSKHILVQDNDFVKAGMPLSDGSISPADILSIKGPAAVQEYLVNGIQEVYRLQGVK 1244

Query: 1244 INDKHIETIVRQMLQKVEILEPGDTGLIKGDHLDKPEF---------------------- 1281
            INDKH E IV QM+QKV I +PGDT  ++ + +D+ +F                      
Sbjct: 1245 INDKHFEVIVHQMMQKVHIEDPGDTIFLENNAVDRWDFADENDAMYDKKVVEDAGDSTDF 1304

Query: 1282 -------------------DKEQEKAIARGGRPAVTQPVLLGITKASLQTKSFISAASFQ 1322
                                K+ ++   R  RPA    +L GIT+ASL TKSFISAASFQ
Sbjct: 1305 KPGQIVSLRRLRDENSQLKRKDLKQITVRDARPATASSILQGITRASLGTKSFISAASFQ 1364

Query: 1323 ETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTG--SYLRSLQRVAAKRDEQLAQQRE 1380
            ETT+VL EA++ GK D + GLKENVIVG LIP+GTG   Y R +     + D+ LA ++E
Sbjct: 1365 ETTKVLNEAAIAGKRDNMLGLKENVIVGHLIPSGTGVRGYERIIVGSQEEYDKLLASKQE 1424

Query: 1381 D 1381
            +
Sbjct: 1425 E 1425