Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1402 a.a., DNA-directed RNA polymerase, beta'' subunit, predominant form from Dechlorosoma suillum PS

 Score = 1657 bits (4290), Expect = 0.0
 Identities = 857/1403 (61%), Positives = 1062/1403 (75%), Gaps = 28/1403 (1%)

Query: 5    VLNIFNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFG 64
            +L++F  V     FD I ISLASP+KIRSWS+GE+KKPETINYRTFKPERDGLFCA+IFG
Sbjct: 4    LLDLFKQVTQEEEFDAITISLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFG 63

Query: 65   PTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLPSR 124
            P KDYECLCGKYKR+K++G+ICEKCGVEVTLA+VRRERMGHIELASP AHIWFLKSLPSR
Sbjct: 64   PIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSLPSR 123

Query: 125  IAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTAEIGA 184
            + M+LDM L+DIERVLYFE Y+V EPG+T L + QLL+EDDY+   EEYGDD F A +GA
Sbjct: 124  LGMVLDMTLRDIERVLYFEAYVVIEPGMTSLNRGQLLTEDDYLAKVEEYGDD-FIALMGA 182

Query: 185  EAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMVLTVV 244
            EA++ LL+ +DL+ E ERLR EL  T S+ K KK +KRLKILE FQ+SG +P+WM+L V+
Sbjct: 183  EAVRELLRTLDLDHEVERLRSELETTGSEAKNKKIAKRLKILEGFQKSGIKPDWMILEVL 242

Query: 245  PVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQES 304
            PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL+AP+II+RNEKRMLQES
Sbjct: 243  PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQES 302

Query: 305  VDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELK 364
            VD+L DNGRRG+ +TGANKRPLKSLADM+KGK GRFRQNLLGKRVDYSGRSVIVVGP+LK
Sbjct: 303  VDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQLK 362

Query: 365  LHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIREHPVL 424
            LH+CGLPK MALELFKPFI+ +L+  GL+ T+KQ+K+MVE ++P VWDILE+VIREHPV+
Sbjct: 363  LHQCGLPKLMALELFKPFIFHKLELMGLATTIKQAKKMVESQEPVVWDILEDVIREHPVM 422

Query: 425  LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARV 484
            LNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ+EAR 
Sbjct: 423  LNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEART 482

Query: 485  LMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMDAGVV 544
            LM+++NN+LSPANG PIIVPSQDIVLGLYY +  R    GEG  FAD+ E+  A+++G+ 
Sbjct: 483  LMLASNNVLSPANGEPIIVPSQDIVLGLYYATRDRINAKGEGMNFADVSEVLRAVNSGLA 542

Query: 545  SLHAKIKARHTEMT--PEGVLLRKV--IDTTPGRMKIAALLPHHPQIGHRLIEKALTKKE 600
             LHAK+  R  E      G  + K+   +TT GR  ++ +LP    +   +I+KAL KKE
Sbjct: 543  DLHAKVSVRLKEYVRGESGEWVEKITRYNTTCGRAILSEILP--KGLPFSVIDKALKKKE 600

Query: 601  IGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETRKL 660
            I  LI+  +R CG K TV+FADK+M  G+  A +AGISF  DD+ +P  K  I+ E  K 
Sbjct: 601  ISKLINTSFRRCGLKETVVFADKLMQNGYALATRAGISFCSDDMRVPTEKHTIIAEAEKE 660

Query: 661  AEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAELQMKH-KDENG---REKEIN 716
             +E E QY +GL+T GE+YNKVVD W +  D+VA  MM +L  +   D +G   +++  N
Sbjct: 661  VKEIETQYTNGLVTFGERYNKVVDIWGRTGDQVAKVMMEQLGHEEVVDRHGKTVKQESFN 720

Query: 717  AIYMMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTHGAR 776
            +IYMMA SGARGS AQ++QL GMRGLMAKP G IIETPI +NF+EGL V +YF STHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHGAR 780

Query: 777  KGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGSRVL 836
            KGLADTALKTANSGYLTRRLVDV QD ++ E+DCGT  G+T++A++EGG+V+  L  R+L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTQNGVTMKALIEGGEVIEPLRDRIL 840

Query: 837  GRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGACYG 896
            GR    DV +P + E V+ A T +DE++ D I+   +  VKVR+ LTC+ + G+C  CYG
Sbjct: 841  GRVVVADVVNPESEETVIEAGTLVDEDLCDLIDKLGIDEVKVRTPLTCDTRYGLCAKCYG 900

Query: 897  RDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTA-QVAEQSFFEASNEGTVRV 955
            RDL RG+ VN+GEAVGVIAAQSIGEPGTQLTMRTFH+GG A + A     +  + G VR 
Sbjct: 901  RDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVADRVDTKSNGVVRF 960

Query: 956  IGPT--VVGSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQRLGD 1012
                  V    G  ++ +R+  V V  D G+ERE +K PYGA L   DG +VK G  L  
Sbjct: 961  TATMRYVTNVKGEKIVFTRSGEVLVTDDNGRERERHKVPYGAILTADDGQVVKAGAVLAT 1020

Query: 1013 WDPYTTPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVADWRT--SARGSDLRPAM 1070
            WDP+T P+ITE AG I+ E++ +G ++ +++D+ TG++  VV D +    A+   LRP +
Sbjct: 1021 WDPHTRPMITEYAGTIKFENVEEGSTVAKQIDDVTGLSTLVVIDPKRGGKAQAKGLRPQV 1080

Query: 1071 GVLSEDGSYKRLSNGGEA-RYLLSAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGL 1129
             +L E+G   ++     A       G+I++VADG +V  G+V+A+IP E AKTRDITGGL
Sbjct: 1081 KLLDENGQEVKMHGTEHAVTITFQVGSIITVADGQQVGVGDVLAKIPQESAKTRDITGGL 1140

Query: 1130 PRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKG 1189
            PRVAELFEAR PKD  ++AE  G V FGKD K K+R+ IT   D DG    A E+LI K 
Sbjct: 1141 PRVAELFEARTPKDVGMLAEYTGTVSFGKDTKGKQRLVIT---DLDG---VAHEYLILKD 1194

Query: 1190 KHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHI 1249
            KH+ VHDG  + KGE I+DG PDPH+IL++ GVEALA ++ DE+Q+VYRLQGV INDKHI
Sbjct: 1195 KHVMVHDGQVVNKGEVIVDGEPDPHEILKLKGVEALARYITDEVQDVYRLQGVKINDKHI 1254

Query: 1250 ETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKAS 1309
            E IVRQML++V I EPGDT  IK + +++ +   E ++ +A G  PA    +LLGITKAS
Sbjct: 1255 EVIVRQMLRRVTITEPGDTRFIKSEQVERADVLDENDRVVAEGKLPASYDYMLLGITKAS 1314

Query: 1310 LQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTG-SYLRSLQRVA 1368
            L T SFISAASFQETTRVLTEA++ GK D L GLKENVIVGRLIPAGTG +Y  S ++ A
Sbjct: 1315 LSTDSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHNSRRQQA 1374

Query: 1369 AKRDEQLAQ---QREDAMEPLPA 1388
            A  D+ L +     + A+E +PA
Sbjct: 1375 AGNDQGLDRVLGGEDVAVEEVPA 1397