Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1413 a.a., DNA-directed RNA polymerase subunit beta' from Herbaspirillum seropedicae SmR1

 Score = 1639 bits (4245), Expect = 0.0
 Identities = 843/1395 (60%), Positives = 1054/1395 (75%), Gaps = 27/1395 (1%)

Query: 5    VLNIFNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFG 64
            +L++F  VQ    FD I+I LASP+KIRSWSFGE+KKPETINYRTFKPERDGLFCA+IFG
Sbjct: 4    LLDLFKQVQQNEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFG 63

Query: 65   PTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLPSR 124
            P KDYECLCGKYKR+K++G+ICEKCGVEVTLA+VRRERMGHIELASP AHIWFLKSLPSR
Sbjct: 64   PIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSLPSR 123

Query: 125  IAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTAEIGA 184
            + M+LDM L+DIERVLYFE Y+VT+PG+TPLK+ Q++SEDDY    EEYGDD F A +GA
Sbjct: 124  LGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDD-FIAFMGA 182

Query: 185  EAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMVLTVV 244
            E I+ LL++ID+++EAE LR+EL  + S+ K KK++KRLK+LEAFQ SG +PEWM++ V+
Sbjct: 183  EGIRELLRSIDIDREAETLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIMEVL 242

Query: 245  PVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQES 304
            PV+PPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+ELRAP+II RNEKRMLQE+
Sbjct: 243  PVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQEA 302

Query: 305  VDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELK 364
            VD+L DNGRRG+ +TGANKRPLKSLA+M+KGK GRFRQNLLGKRVDYSGRSVIVVGP+LK
Sbjct: 303  VDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQLK 362

Query: 365  LHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIREHPVL 424
            LH+CGLPK MALELFKPFI+ +L+  GLS T+K +K++VE ++P VWDILEEVIREHPV+
Sbjct: 363  LHQCGLPKLMALELFKPFIFNKLELMGLSTTIKAAKKLVEAQEPVVWDILEEVIREHPVM 422

Query: 425  LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARV 484
            LNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLS+EAQ+EAR 
Sbjct: 423  LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEART 482

Query: 485  LMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMDAGVV 544
            LM+++NNIL P+NG P IVPSQDIVLGLYY +        EG +F D+ E+  A D   V
Sbjct: 483  LMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINGKNEGMMFQDVSEVIRAYDNKEV 542

Query: 545  SLHAKIKARHTE-----MTPEGVLLRKVIDTTPGRMKIAALLPHHPQIGHRLIEKALTKK 599
             L  +I  R  E     +T E V   K  +TT GR  ++ +LP    +   ++ +AL KK
Sbjct: 543  ELATRITVRIVEHPKDPVTGEFVRTVKRYETTIGRAILSEILP--KGLPFSVLNRALKKK 600

Query: 600  EIGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETRK 659
            EI  LI+  +R CG +ATV+FAD++M  GF+ A +AGIS   DD+++P +K  ++     
Sbjct: 601  EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATLIAAAES 660

Query: 660  LAEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAELQMK----HKDENGREKEI 715
              ++ EQQY+ GL+T GE+YNKVVD W KA D V   MM +L+++     + +   ++  
Sbjct: 661  EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDEVGKAMMDQLKVEDVITREGKKTTQESF 720

Query: 716  NAIYMMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTHGA 775
            NAIYMMA SGARGS AQ++QL GMRGLMAKP G IIETPI +NF+EGL V +YF STHGA
Sbjct: 721  NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA 780

Query: 776  RKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGSRV 835
            RKGLADTALKTANSGYLTRRLVDV QD +++E+DCGT+ G  ++A+VEGG+V+ +L  R+
Sbjct: 781  RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGSAMKALVEGGEVIEALRDRI 840

Query: 836  LGRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGACY 895
            LGR  A D+ +P     +  A T +DE+  + IE   +  VKVR+ LTC+ + G+C  CY
Sbjct: 841  LGRVAATDIVNPEDQSTLFEAGTLLDEDKVEEIERMGIDEVKVRTPLTCDTRYGLCAKCY 900

Query: 896  GRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTA-QVAEQSFFEASNEGTVR 954
            GRDL RG  VN GEAVGV+AAQSIGEPGTQLTMRTFHIGG A + A  S  EA + GTVR
Sbjct: 901  GRDLGRGLLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR 960

Query: 955  VIGPT--VVGSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQRLG 1011
                   V    G  +++SR+  V +  D G+ERE +K PYGA L VKDG  +K G  L 
Sbjct: 961  FTATMRYVTNGKGEQIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGLTIKAGTALA 1020

Query: 1012 DWDPYTTPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVADWRTSARGSD-LRPAM 1070
             WDP T PIITE +G ++ E++ +G ++ +++DE TG++  VV D +     S  +RP +
Sbjct: 1021 TWDPLTRPIITEYSGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGPSSKVMRPQV 1080

Query: 1071 GVLSEDGSYKRLSNGGEARYL-LSAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGL 1129
             +L+E G   +++    +  +    GA+++V DG +V  GEV+ARIPTE  KTRDITGGL
Sbjct: 1081 KLLNEQGEEVKIAGTEHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL 1140

Query: 1130 PRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKG 1189
            PRVAELFEAR PKD  ++AE+ G V FGK+ K K+R++IT   D +G +    EFLI K 
Sbjct: 1141 PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEIT---DMEGTKH---EFLITKD 1194

Query: 1190 KHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHI 1249
            K + VHDG  + KGE I+DG  DP DILR+LG+EALA ++VDE+Q+VYRLQGV INDKHI
Sbjct: 1195 KQVLVHDGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHI 1254

Query: 1250 ETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKAS 1309
            E IVRQML++V+++EPGDT  I G+ +++ E   E ++  A G  PA  + VLLGITKAS
Sbjct: 1255 EVIVRQMLRRVQVVEPGDTNYITGEQVERSELLDENDRVTAEGKIPATYENVLLGITKAS 1314

Query: 1310 LQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTGSYLRSLQRVAA 1369
            L T SFISAASFQETTRVLTEA++ GK D L GLKENVIVGRLIPAGTG    +  R   
Sbjct: 1315 LSTDSFISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTG---LAFHRARK 1371

Query: 1370 KRDEQLAQQREDAME 1384
            ++D   A++R   +E
Sbjct: 1372 EKDAWEAEERAALLE 1386