Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 1607 bits (4162), Expect = 0.0
 Identities = 812/1346 (60%), Positives = 1024/1346 (76%), Gaps = 28/1346 (2%)

Query: 21   IRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFGPTKDYECLCGKYKRMK 80
            I+I++ASPE IR WS+GE+KKPETINYRTFKPERDGLFCA+IFGP KDYEC CGKYKRMK
Sbjct: 25   IQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRMK 84

Query: 81   YKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLPSRIAMMLDMPLKDIERVL 140
            ++GI+CEKCGVEV  ++VRRERMGHIELA+PVAHIWFLK+LPS+I  +LDM + D+E+VL
Sbjct: 85   HRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKVL 144

Query: 141  YFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTAEIGAEAIQNLLKAIDLEKEA 200
            YF+ YIV +PG T L + Q++SED Y++  + YG+D+ T  +GAEA+++LL+ ++LE+  
Sbjct: 145  YFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEELR 204

Query: 201  ERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMVLTVVPVIPPELRPLVPLDGG 260
             +LREE   T S  K+KK +KRLKI+EAF ES N+PEWMV+ V+PVIPPELRPLVPLDGG
Sbjct: 205  VQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDGG 264

Query: 261  RFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQESVDALFDNGRRGRVITG 320
            RFATSDLNDLYRRVINRNNRLKRL+EL APDIIIRNEKRMLQE+VDALFDNGRRGR ITG
Sbjct: 265  RFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAITG 324

Query: 321  ANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKKMALELFK 380
             N RPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVIVVGP+LKLH+CGLPKKMALELFK
Sbjct: 325  TNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELFK 384

Query: 381  PFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIREHPVLLNRAPTLHRLGIQAFE 440
            PFIY+ L+ +GL+ T+K +K+MVERE+  VWDILEEV+RE+P++LNRAPTLHRLGIQ+FE
Sbjct: 385  PFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSFE 444

Query: 441  PKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANGRP 500
            P L+EGKAIQLHPLVC+A+NADFDGDQMAVHVPLS+EAQ+E RVLMMSTNNILSPANG P
Sbjct: 445  PLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGSP 504

Query: 501  IIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMDAGVVSLHAKIKARHTEMTPE 560
            +IVPSQDIVLGLYY++V R  E GE   F    E+ AA DAGVV+LHA+I  R  +    
Sbjct: 505  VIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRMED---- 560

Query: 561  GVLLRKVIDTTPGRMKIAALLPHHPQIGHRLIEKALTKKEIGNLIDIVYRHCGQKATVIF 620
                 KV+ TT GR+ +  LLPH   +   ++   LTKK I  L+   YR  G KATVI 
Sbjct: 561  ----GKVVRTTVGRILVWELLPH--CVPFSMVNTTLTKKNIARLVSTAYRDAGTKATVIL 614

Query: 621  ADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETRKLAEEYEQQYADGLITKGEKYN 680
             D++  +G++ A +AG++    D+ IP  K  ++E  +   ++ E+QY DG+IT+ EKYN
Sbjct: 615  CDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRTEKYN 674

Query: 681  KVVDAWAKATDRVADEMMAELQMK-HKDENGREKE----INAIYMMAHSGARGSQAQMKQ 735
            KVVD W KAT  V++EM+ E+     +D     KE     N+IYMM+ SGARG+Q QM+Q
Sbjct: 675  KVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQDQMRQ 734

Query: 736  LGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTHGARKGLADTALKTANSGYLTRR 795
            L GMRGLMAKPSGEIIETPI S+F+EGL+V +YF STHGARKGLADTALKTANSGYLTRR
Sbjct: 735  LAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYLTRR 794

Query: 796  LVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGSRVLGRFTAEDVKDPGTGELVVP 855
            LVDV QD I+ E DCGT  GI L  + EGG++ + L  R LGR     V DP T +L+ P
Sbjct: 795  LVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRDLLFP 854

Query: 856  ADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGACYGRDLARGTPVNIGEAVGVIA 915
             +T +DEN+A  +    V SV +RS LTC++  G+C  CYGRDLARG  VNIGE VG+IA
Sbjct: 855  ENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETVGIIA 914

Query: 916  AQSIGEPGTQLTMRTFHIGGTA-QVAEQSFFEASNEGTVRVIGPTVV-GSDGALVIMSRN 973
            AQSIGEPGTQLTMRTFHIGGTA +  E+S FEA + G V +     V   DG  ++M ++
Sbjct: 915  AQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMVMGKS 974

Query: 974  TSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQRLGDWDPYTTPIITEVAGKIRAED 1032
              ++++ D G+ERE Y  P G+RL V +G+ +++GQ L +WDP+  P ++EV G IR  D
Sbjct: 975  GQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVIRFSD 1034

Query: 1033 LVDGLSIREEVDEATGIAQRVVADWRTSARGSDLRPAMGVLSEDGSYKRLSNGGEARYLL 1092
            +V+G + +E++DEAT +  + + ++RT    ++ RP++ +  E G  K   N   A Y L
Sbjct: 1035 IVEGKTFQEKMDEATRMTTQTIIEYRT----TNFRPSISICDEHGEVKMRGNNIPATYSL 1090

Query: 1093 SAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGLPRVAELFEARRPKDCAVIAEMDG 1152
              GAI+ V +G +++ G++IAR P E +KT+DI GGLPRVAELFE R+PKD AV++E+ G
Sbjct: 1091 PVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVVSEIAG 1150

Query: 1153 RVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKGKHIAVHDGDYITKGEYIIDGNPD 1212
             V +  + K KR++ +TP++       EA E+L+PKGKHI V DGD++  G+ + +G+P+
Sbjct: 1151 IVTYAGETKGKRKLVVTPEIG------EAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPE 1204

Query: 1213 PHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHIETIVRQMLQKVEILEPGDTGLIK 1272
             HDILR  G + LA +L DEIQEVYR QGV I+DKHIE IVRQML+KV +L+PG T  + 
Sbjct: 1205 LHDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFLV 1264

Query: 1273 GDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKASLQTKSFISAASFQETTRVLTEAS 1332
            G+ +DK EF  E  +A+  G  PA  +P++LGIT+ASL T SFISAASFQETT+VLTEAS
Sbjct: 1265 GEQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEAS 1324

Query: 1333 VHGKTDTLEGLKENVIVGRLIPAGTG 1358
            + GK D L GLKENVIVGRLIPAGTG
Sbjct: 1325 LRGKMDYLRGLKENVIVGRLIPAGTG 1350