Pairwise Alignments

Query, 889 a.a., N-acetyl-glucosamine/N-acetyl-chitin oligosaccharide outer membrane transporter nagA from Caulobacter crescentus NA1000

Subject, 970 a.a., N-acetylglucosamine-regulated TonB-dependent outer membrane receptor from Xanthomonas campestris pv. campestris strain 8004

 Score =  243 bits (620), Expect = 4e-68
 Identities = 249/959 (25%), Positives = 391/959 (40%), Gaps = 162/959 (16%)

Query: 10  AASASAMVVMIAAPAMAQ------SGGNEVE--QVVITGIRASLLQSIESKRKADAIVDV 61
           +A A ++ V++AAPA AQ      +GG+ V+   V + G+RASL++S   KR A  IVD 
Sbjct: 25  SAMAISIGVLLAAPAYAQQAPLTNAGGSAVDLDTVEVRGVRASLIKSQVIKRDASQIVDS 84

Query: 62  VTAEDVGKFPSTNVAEALTIVPGVTVDRAFG---------QGEKVSILGTDPALNRTLLN 112
           V+AED+G  P  +V E L  V GVT+DR            +G  V I G      R  LN
Sbjct: 85  VSAEDIGALPDRSVTETLQRVSGVTIDRFMARSDPDHFSAEGSGVMIRGLTQV--RGELN 142

Query: 113 GQTVASADWFILDSPGRTFNYALLAPQIVGKVDVYKSPEARIDEGSIGGTVIVNTRKPLD 172
           G+ V SA      + GR  ++  +  +++  VDVYK+P A I EG +GGTV + TR P D
Sbjct: 143 GRDVFSA------ASGRGLSFEDVPAELMAGVDVYKNPSAEIIEGGLGGTVNLRTRMPFD 196

Query: 173 LKSGTIAGAVSYLYTDRSKKGDLQGSLLAS--WKNADSTFGASFSIQRAEDQLRRDGVET 230
                + G V Y Y D SKK     S L S  W       G    I  +E   R DG++ 
Sbjct: 197 NPGRIVGGNVDYNYGDMSKKYKPSASFLFSDRWNTGIGEMGFMIDIAHSELATRSDGIQV 256

Query: 231 YGTIAANQWAGGNPDNPVDSRTKGCV--GSCASTLTANLGARSPNAFGASYFEQGRTRTT 288
                           P   RT   V  GS  S +        P        +  RTR  
Sbjct: 257 ---------------EPYVRRTDDAVLAGSGRSEVYV------PGGVNWRQLDFERTRDG 295

Query: 289 YTTALQYKPNDQLSL---------EFNWLKIDADYDNTNQSMYAFQGNT--WNSLGALTG 337
              A Q+KP+D   +         E NW +  A ++++N S+    G T  ++  GA   
Sbjct: 296 IAAAFQWKPSDATEIYAQFLRSRYEMNWQERAAFFNDSNNSITPAPGTTFDYDERGAFL- 354

Query: 338 LTVNNGVVSKASFNNALS----VLDVQHREAGLKSDTFHLKGGYK---GDGWDLNGEVGK 390
                G    +S+  AL+      +  +R +  ++ T  L  G+     D   + G++  
Sbjct: 355 ----RGAPVSSSWRGALTGDGVRFNTDNRYSEQRTTTTDLSVGFSHFFNDNLQIKGDMQL 410

Query: 391 STADGGTKRQVFLEFLNWASYTVDISGAPKSPGSLTYTTNVLGNPSAFATDPG---WSG- 446
             ++                 T D+SG         Y +  + NP AF  DP    W+  
Sbjct: 411 VQSENEQLDFTVFSATYLPGLTYDVSG--------KYPSVQIANP-AFTQDPSNYFWAAA 461

Query: 447 --NLVSKPTSDEEKYAQFDFGKDFDGVIQRVQVGYKRREH-----QTGQQYAGIAITGVA 499
             +L              ++  D    ++  + G +  +       +G  +  I+    A
Sbjct: 462 MDHLGKNRGRQLSTRVDLEYTFDDSSWLRFARFGMRATDRNQVNKNSGYNWGVISDNWAA 521

Query: 500 APASSFNPSTVP------------SNYLKGFDGVGTQMQNRFRIDGNAMVSYVESGKWLA 547
            P +S   + +             SN+ +G    G  +     +  +++V+   S   + 
Sbjct: 522 IPGTSNGLANMSDFMTDQSSLFTFSNFFRG----GVNVPTTLVVPNSSLVNNYGSASQMI 577

Query: 548 AGATMPKPSIFAAAEFTAGNWNIQ-EDIDALYAQANFKADN-----VRGNFGVRYVKTSV 601
                 + S +A   +   + N Q E   A YA   F  D      V GN GVR V+T  
Sbjct: 578 QQIVALRGSGWAPDTYQPQDTNRQFERTQAAYAALYFGNDEAWGIPVDGNVGVRVVQTKT 637

Query: 602 DS---------AGYVCKPGAACNKAADWSWKSTKKSYDNVLPSVNIIVDAREDLVLRFAA 652
            +         AG    P         +   +++ SY NVLPS+N+ +   + L  RFAA
Sbjct: 638 QAEGFGQFQNLAGLNVSPELQARYTGQYFDNNSQGSYTNVLPSLNLRLRFSDSLQWRFAA 697

Query: 653 AQVIARPNYSDMTNYFWLSDGI--------LTGGGGNPALEPYKSSNFNASAEWYFQPQA 704
           ++ +ARP+Y+ +  Y  L+             G  GNP L+P  ++ F+ + EWYF    
Sbjct: 698 SKAMARPDYTQLQPYVLLNVETNDAGQATDFVGTAGNPNLKPMVANQFDTALEWYFDTSD 757

Query: 705 ILSAEVFYKDISNYILQRTQPESYFNQSQGKVTTYQISRPFNAGSAEVKGLAMAYQQTFG 764
           +L   +FYK + +Y   +T+ E Y N+       + ++RP+N     ++G    Y Q F 
Sbjct: 758 MLYTTLFYKKVKDYFSTQTRSEIYDNR------PWLVTRPYNMDEGTIRGAEFGYTQFFD 811

Query: 765 ------GGFGLLANYTYADASGQSGA---------------PLPYSSKNQVNLSPFYENG 803
                  GFG+ AN+T+ D+ G +                 PL   S+   NL+  YE G
Sbjct: 812 SLPGWLNGFGVNANFTFVDSKGGANTATDPYTNTTVTGVELPLEGLSRRSYNLAGIYEKG 871

Query: 804 PFSARATFTWRSKY-FTGVDRGDDM--FVKAAKTLDATVGYAVTKNITMSLSGQNLLDS 859
           P S R  + WRS+Y  T  D    +  +      LD +  Y    ++ + L   NL ++
Sbjct: 872 PLSLRLAYNWRSRYLLTTSDAATRLPTWADDYGQLDGSFFYRFNDHLQLGLQANNLTNT 930