Pairwise Alignments

Query, 889 a.a., N-acetyl-glucosamine/N-acetyl-chitin oligosaccharide outer membrane transporter nagA from Caulobacter crescentus NA1000

Subject, 951 a.a., TonB-dependent receptor (RefSeq) from Shewanella sp. ANA-3

 Score =  287 bits (734), Expect = 2e-81
 Identities = 247/920 (26%), Positives = 411/920 (44%), Gaps = 109/920 (11%)

Query: 20  IAAPAMAQSGGNEVEQVVITGIRASLLQSIESKRKADAIVDVVTAEDVGKFPSTNVAEAL 79
           + A   AQ+   EVE++ +TGIR S+ + +  K+ A ++VD+V A+D+GKFP  N+AEAL
Sbjct: 41  VQAKDTAQAQDAEVERIQVTGIRNSIKEGMFLKQNAVSVVDLVVADDIGKFPDENLAEAL 100

Query: 80  TIVPGVTVDRAFGQGEKVSILGTDPALNRTLLNGQTVASADWFILDSPGRTFNYALLAPQ 139
             +PGVT+ R  G+G+ + + G     N T LNG+ +AS      ++ GR FN+  +A +
Sbjct: 101 QRIPGVTITRNGGEGQNILVRGLGDGYNVTTLNGRKLAS------ENAGRDFNFDTIASE 154

Query: 140 IVGKVDVYKSPEARIDEGSIGGTVIVNTRKPLDLKSGTIAGAVSYLYTDRSKKGDLQGSL 199
           +V  + VYKSPEAR+ EG IG  V + TRKPLDL+  TI  +   +Y  R++      SL
Sbjct: 155 LVNVLAVYKSPEARLTEGGIGAIVDIQTRKPLDLEGRTIQASAKGIYESRTEDIHPHASL 214

Query: 200 LASWKNADSTFGASFSIQRAEDQLRRDGVETYGTIAANQ-WAGGNPDNPVDSRTKGCVGS 258
           +   K  D +FGA  S   +   LR D     G    ++ W   +   PVD+   G +  
Sbjct: 215 IIGDKTDDDSFGALVSAVYSRKTLRADTYSAEGFFDEDEGWGVDSAGVPVDTNNNGVIDP 274

Query: 259 CASTLTANLGARSPNAFGASYFEQGRTRTTYTTALQYKPNDQLSLEFNWLKIDADYDNTN 318
                     ++ P+    +  +  R R   T ALQ++P D L + F+ L     Y   N
Sbjct: 275 -----GEIYASKIPSYMYFANAQDVRERVGGTLALQWRPLDNLDINFDGL-----YSRYN 324

Query: 319 QSMYAFQ------GNTWNSLGAL--TGLTVNNGVVSKASFNNALSVLDVQHREAGLKSDT 370
              + +Q         W     L    +  + G V   +     +++++ +     K+DT
Sbjct: 325 TDGHKYQIGFVNYDEEWTPGTPLFTDAIFDDQGRVVSMNQTGDNTMVELLNLSTPRKTDT 384

Query: 371 FHLKGGYKGD-----GWDLNGEVGKS---TADGGTKRQV----FLEFLNWASYT-----V 413
           + +  G K D      W +  +V  S    A+ G  R V    F++ ++   YT      
Sbjct: 385 YQM--GLKADWYVMPNWSITADVAYSAAQNANNGDNRFVVARGFVDGID-IDYTRGNMLP 441

Query: 414 DISGAPKSPGSLTYTTNVLGNPSAFATDPGWSGNLVSKPTSDEEKYAQFDFGKDFDGVIQ 473
           D+  +P       Y  +   N      D      L+S+   DE   ++ DFG ++   ++
Sbjct: 442 DVVISPGLSADQKYGAHYSRNSGVDVDDKITDIKLISQYIPDEGIISKVDFGVNYVKQVK 501

Query: 474 RVQVGYKRREHQTGQQYAGIAITGVA----------------APASSFNPSTVPSNYLKG 517
           +          Q  +    +   G                   P+S F P+    N+L G
Sbjct: 502 KQTEFASANSSQFSRGGYYLTRDGYTFDNSTVFTQGEFELFQIPSSVFVPANF-DNFLDG 560

Query: 518 FDGVGTQMQNRFRIDGNAMVSYVESGKWLAAGATMPKPSIFAAAEFTAGNWNIQEDIDAL 577
            + +  +    F  D + ++ Y  S    AA  ++       A+   AG++ + E + + 
Sbjct: 561 ENSISPEPWPSF--DYDKLLEYYRSINQEAADKSI------VASLNKAGSYEVTEAVTSA 612

Query: 578 YAQANFKAD----NVRGNFGVRYVKTSVDSAGYVCKPGA----ACNKAADWSWK-----S 624
           Y Q N + +        N G+R  +T V S GY          +  +  +  WK     S
Sbjct: 613 YVQVNIEEEIFDLPYMLNLGLRASQTKVTSDGYAYDLAKVELDSAGQPTNNDWKNVVQAS 672

Query: 625 TKKSYDNVLPSVNIIVDAREDLVLRFAAAQVIARPNYSDM-----TNYFWLSDGILTGGG 679
              SY NVLPS+N  ++ ++DL+LR +AA+V++RP+   +      ++    +G+ T   
Sbjct: 673 YDDSYTNVLPSMNFKLNLQDDLLLRVSAAEVLSRPSLYALRVWAAPSFTTRENGLPTLTR 732

Query: 680 GNPALEPYKSSNFNASAEWYFQPQAILSAEVFYKDISNYILQRTQPESYFNQSQGKVTTY 739
           GNP++ P K+   + S EWYF   + LS  +F KDI ++I     P+        + T Y
Sbjct: 733 GNPSVAPEKARQGDISLEWYFHESSSLSGAIFIKDIESFITDEKGPQMV------EGTEY 786

Query: 740 QISRPFNAG-SAEVKGLAMAYQQTFG-------GGFGLLANYTYADAS------GQSGAP 785
            +++P +    A+V+G+  A+QQ+          G G   NYTY D+S         G P
Sbjct: 787 YVTQPVSGKYGAKVQGVEAAWQQSLDEYLPEPFNGLGFQLNYTYVDSSYDDPEIDAKGLP 846

Query: 786 LPYSSKNQVNLSPFYENGPFSARATFTWRSKYFTGVDR-GDDMFVKAAKTLDATVGYAVT 844
               SKN  N   +YE     AR  + WRSK+    +  G   +++    LDA+  Y + 
Sbjct: 847 FKGMSKNSYNAVLYYEQYGLQARVAYNWRSKFLVDPEAWGGPAWIQDYGQLDASASYDIF 906

Query: 845 KNITMSLSGQNLLDSEYYAY 864
           +N+++     NL ++ Y  Y
Sbjct: 907 ENVSIFAEASNLTNNRYSGY 926