Pairwise Alignments

Query, 537 a.a., methyl-accepting chemotaxis protein from Caulobacter crescentus NA1000

Subject, 689 a.a., methyl accepting chemotaxis transmembrane protein from Sinorhizobium meliloti 1021

 Score =  305 bits (780), Expect = 5e-87
 Identities = 192/411 (46%), Positives = 248/411 (60%), Gaps = 48/411 (11%)

Query: 170 ENERQRLEAEQKATRARQEHVVTLLAEALDRLAAGDLLARIDGEVCSEFEKLKADFNHAV 229
           E ER+R E E++         V  L  AL++LA G+L   I        + L+ DFN  V
Sbjct: 284 ETERERHETEREQAIGLINTAVEALGGALNQLADGNLAVAIREPFDGGLDALRRDFNDTV 343

Query: 230 ELLDQAMCGVGGATEGIRSSTEEISVAADDLSRRTEQQAASLEQTAAALDEITATVRRSA 289
           E L Q +  V   T  I S+  ++  AADDL+RRTE+QAASLEQT+AAL+EIT TV+ + 
Sbjct: 344 ERLSQVLSSVKENTASIESNGRQMRSAADDLARRTEKQAASLEQTSAALEEITVTVKTAT 403

Query: 290 AGAKQAQEVVAGAKTEAERSGSVVNQAVAAMGEIETSSREIGNIIGVIDEIAFQTNLLAL 349
             A++A  +V   +  AE SG +V +A+AAM  IE +S EIG II VIDEIAFQTNLLAL
Sbjct: 404 ERAEEASHMVDETRINAEESGRIVGEAIAAMARIEGASSEIGKIIDVIDEIAFQTNLLAL 463

Query: 350 NAGVEAARAGEAGRGFAVVAQEVRALAQRSADAAKEIKALINTSTKQVEAGVALVGQTGD 409
           NAGVEAARAGEAG+GFAVVAQEVR LAQR+A AAK+IKAL++ S  +V+ GV LV +TGD
Sbjct: 464 NAGVEAARAGEAGKGFAVVAQEVRELAQRAAGAAKDIKALVSRSGNEVKTGVRLVQETGD 523

Query: 410 ALRGIVSKVAEIDELIAQISVSAQEQSGGLHEVNTAVNQMDQVTQQNAAMVEQTTAATHS 469
           AL  I +KVA I+E ++ I ++A+EQS GL E++TAV Q+DQ+TQQNAAMVEQT AA+H+
Sbjct: 524 ALGRIGAKVACINEHMSSIVMAAREQSTGLREIDTAVAQLDQMTQQNAAMVEQTNAASHT 583

Query: 470 LKSQTGELVRQVETFRTSEGR------------------------RSSAAASPAPVQMAQ 505
           L     +L   V  FR  + R                        R++ A + APV + +
Sbjct: 584 LAQDAEKLSEIVGQFRHGQARETAIRTAAIQPPGRAGSATASAPARAATATAAAPVSLRK 643

Query: 506 PA---RSPRPQ----------------SRPGGPPISRGATAVAVKEEWEEF 537
           PA    S RP                 +RPG  P     +  A  E WEEF
Sbjct: 644 PAAAQSSTRPAPSPAKALMGKLAGAFGNRPGSTP-----SVTASGENWEEF 689



 Score = 50.1 bits (118), Expect = 3e-10
 Identities = 103/408 (25%), Positives = 170/408 (41%), Gaps = 60/408 (14%)

Query: 111 IGGYAVVGDHLVRAVIDSMWPRGLLAKGGSDRAGEAVAALMKAI--FLDMDFA-ISIYLE 167
           + G A +G   V AV       GL  +GGS  A +      + +    +M  A + + L 
Sbjct: 20  LAGAAFLGFGSVLAV-------GLYEQGGSQEALDKAVIAQRGMGTLEEMRLARLELVLA 72

Query: 168 TLENERQRLEAEQKATRARQEHVVTLLAEALDRLAAGDLLARIDG--EVCSEFEKLKADF 225
            ++    R E   +  RA Q  + + L     R A  + LAR+ G  EV + FE   A  
Sbjct: 73  AMDTIVDRGERRIQPERAAQ--IGSSLEVIEGRQADLEALARLIGKPEVLAGFESDMAQL 130

Query: 226 NHAVELLDQAMCGVGGATEGIRSSTEEISVAADDLSRRTEQQAASLEQTAAALDEITATV 285
             AVE   +A+   G       +  EE +   D +    E+  ASL Q A A   +    
Sbjct: 131 RKAVEQDLKALVEAG-------APAEEFARIDDVIDAAGERVGASLAQLADAAASL---- 179

Query: 286 RRSAAGAKQAQEVVAGAKTEAERSGSVVNQAVAAMGEIETSSREI---GN-----IIGVI 337
              AAG       +A  +T  E   +++ QA A +  + T    I   GN     I+G+ 
Sbjct: 180 ---AAGR------IADVRTSGEH--ALMLQAAACLLAMATLIGLIWFHGNVLRRGILGLR 228

Query: 338 DEI--AFQTNLLALNAGVEAA-RAGEAGRG---FAVVAQEVRALAQRSADAAKEIKALIN 391
           D +      +L A  AG++     GE  R    F V A E RAL +R+  + +E +    
Sbjct: 229 DSMRRIHSGDLTAEAAGLDRGDEIGEMARSVELFRVSAIEKRALKERARASRQETETERE 288

Query: 392 TSTKQVEAGVALVGQTGDALRGIVSKVAEIDELIAQISVSAQEQ-SGGLHEVNTAVNQMD 450
               + E  + L+    +AL G ++++A+       ++V+ +E   GGL  +    N   
Sbjct: 289 RHETEREQAIGLINTAVEALGGALNQLAD-----GNLAVAIREPFDGGLDALRRDFNDTV 343

Query: 451 QVTQQNAAMVEQTTAATHS----LKSQTGELVRQVETFRTSEGRRSSA 494
           +   Q  + V++ TA+  S    ++S   +L R+ E    S  + S+A
Sbjct: 344 ERLSQVLSSVKENTASIESNGRQMRSAADDLARRTEKQAASLEQTSAA 391



 Score = 35.8 bits (81), Expect = 5e-06
 Identities = 73/383 (19%), Positives = 141/383 (36%), Gaps = 38/383 (9%)

Query: 147 VAALMKAIFLDMDFAISIYLETLENERQRLEAEQKATRARQEHVVTLLAEALDRLAAGDL 206
           +A L KA+  + D    +       E  R++    A   R    +  LA+A   LAAG +
Sbjct: 127 MAQLRKAV--EQDLKALVEAGAPAEEFARIDDVIDAAGERVGASLAQLADAAASLAAGRI 184

Query: 207 L-ARIDGEVCSEFEKLKADFNHAV---------ELLDQAMCGVGGATEGIRSSTEEISVA 256
              R  GE     +        A           +L + + G+  +   I S       A
Sbjct: 185 ADVRTSGEHALMLQAAACLLAMATLIGLIWFHGNVLRRGILGLRDSMRRIHSGDLTAEAA 244

Query: 257 ADDLSRRTEQQAASLEQTAAALDEITATVRRSAAGAKQAQEVVAGAKTEAERSGSVVNQA 316
             D      + A S+E    +  E  A   R+ A  ++ +      +TE E++  ++N A
Sbjct: 245 GLDRGDEIGEMARSVELFRVSAIEKRALKERARASRQETETERERHETEREQAIGLINTA 304

Query: 317 VAAMGEIETSSREIGNIIGVIDEIAFQTNLLALNAGVEAARA--GEAGRGFAVVAQEVRA 374
           V A+G       + GN+   I E          + G++A R    +     + V   V+ 
Sbjct: 305 VEALGGALNQLAD-GNLAVAIRE--------PFDGGLDALRRDFNDTVERLSQVLSSVKE 355

Query: 375 LAQRSADAAKEIKALINTSTKQVEAGVALVGQTGDALRGI-------VSKVAEIDELIAQ 427
                    +++++  +   ++ E   A + QT  AL  I         +  E   ++ +
Sbjct: 356 NTASIESNGRQMRSAADDLARRTEKQAASLEQTSAALEEITVTVKTATERAEEASHMVDE 415

Query: 428 ISVSAQEQSGGLHEVNTAVNQMDQVTQQNAA---MVEQTTAATHSLKSQTGELVRQVETF 484
             ++A+E    + E   A+ +++  + +      ++++    T+ L    G     VE  
Sbjct: 416 TRINAEESGRIVGEAIAAMARIEGASSEIGKIIDVIDEIAFQTNLLALNAG-----VEAA 470

Query: 485 RTSEGRRSSAAASPAPVQMAQPA 507
           R  E  +  A  +    ++AQ A
Sbjct: 471 RAGEAGKGFAVVAQEVRELAQRA 493