Pairwise Alignments

Query, 419 a.a., ornithine decarboxylase from Caulobacter crescentus NA1000

Subject, 391 a.a., ornithine decarboxylase (RefSeq) from Shewanella amazonensis SB2B

 Score =  119 bits (298), Expect = 2e-31
 Identities = 107/340 (31%), Positives = 163/340 (47%), Gaps = 26/340 (7%)

Query: 42  DVFYAVKANPSPWVIRELAKAGVRSFDVASLNEVELV-ANEAPGSRMAFMHPVKSRAAIS 100
           +V+YAVKANP+  ++  L   G  +FD+AS+ E+++V A      R++F + +K R  + 
Sbjct: 55  NVYYAVKANPAKEILTLLKDKG-SNFDIASIYELDMVMAVGVTADRVSFGNTIKKRKDVR 113

Query: 101 AAYFDHGVKTFSFDTHEELAKILDATGQAKDLNLIVRMGVQAEGAAYSLSGKFGVEMHNA 160
           A +++ GV+ F+ D+  +L  I +    +K    I+  G Q   A + LS KFG +   A
Sbjct: 114 A-FYERGVRLFASDSEADLRMIAEEAPGSKVYVRILTEGSQT--ADWPLSRKFGCQNEMA 170

Query: 161 PDLLLAARRATQDLMGVSFHVGSQCMRPTAFQAAMAQASRALVRA----GVLADVVDVGG 216
            +LL  A+    D  G+SFHVGSQ     A+ AA+ +      R     G++  ++++GG
Sbjct: 171 YELLALAKELGLDPYGISFHVGSQQRDIGAWDAAIGKVKVLFDRLREDHGIVLKMINMGG 230

Query: 217 GFPSIYPGMVPPDLSEYLAAIDRGFAEMMVHETTELWCEPGRALVAEASSLLVKVEL--- 273
           GFP+ Y       L  Y   I     E    E  E+  EPGR+L++ A  L+ +V L   
Sbjct: 231 GFPANYIDKT-NQLGVYAQQIKHFLKEDFGDELPEIILEPGRSLISNAGVLISEVVLISR 289

Query: 274 KKGDAL----YLNDGSYGSLFDAAHMKWPFPVKLYRKSGEVVEEGLKPFRFYGPTCDSVD 329
           K   AL    Y + G +  L +       +P+    K GE     L      GPTCDS D
Sbjct: 290 KSHTALERWVYTDVGKFSGLIETMDEAIKYPI-FTEKKGE-----LDKCVIAGPTCDSAD 343

Query: 330 HM--PGPFYLPESVDEGDYIEIGMLGAYGVAMN-TRFNGF 366
            M     + LP  +  GD +     GAY    +   FNGF
Sbjct: 344 IMYEHYAYGLPADLAIGDRLYWLTAGAYTTTYSAVCFNGF 383