Pairwise Alignments

Query, 419 a.a., ornithine decarboxylase from Caulobacter crescentus NA1000

Subject, 391 a.a., ornithine decarboxylase (RefSeq) from Shewanella sp. ANA-3

 Score =  111 bits (277), Expect = 4e-29
 Identities = 100/341 (29%), Positives = 163/341 (47%), Gaps = 28/341 (8%)

Query: 42  DVFYAVKANPSPWVIRELAKAGVRSFDVASLNEVELVANEA-PGSRMAFMHPVKSRAAIS 100
           DV+YAVKANP+  ++  L   G  +FD+AS+ E+++V N      R+++ + +K R  + 
Sbjct: 55  DVYYAVKANPAAEILTLLKNKG-SNFDIASIYELDMVTNVGVTPDRVSYGNTIKKRQDVR 113

Query: 101 AAYFDHGVKTFSFDTHEELAKILDATGQAKDLNLIVRMGVQAEGAA-YSLSGKFGVEMHN 159
           A +++ GV+ ++ D+  +L  I +   +A    + VR+  +    A + LS KFG +   
Sbjct: 114 A-FYERGVRMYASDSEADLRMIAE---EAPGSRIYVRILTEGTDTADWPLSRKFGCQNEM 169

Query: 160 APDLLLAARRATQDLMGVSFHVGSQCMRPTAFQAAMAQASRALVRA----GVLADVVDVG 215
           A +LL+ A     +  G+SFHVGSQ     A+ +A+ +      R      ++  ++++G
Sbjct: 170 AYELLVLANELGLEPFGISFHVGSQQRDIGAWDSAIGKVKSIFDRLRDEHNIVLKMINMG 229

Query: 216 GGFPSIYPGMVPPDLSEYLAAIDRGFAEMMVHETTELWCEPGRALVAEASSLLVKVEL-- 273
           GGFP+ Y       L  Y   I     E    +  ++  EPGR+L++ A  L+ +V L  
Sbjct: 230 GGFPANYIDKT-NQLGVYAEQITHFLKEDFGDDLPQIILEPGRSLISNAGVLVSEVVLIS 288

Query: 274 -KKGDAL----YLNDGSYGSLFDAAHMKWPFPVKLYRKSGEVVEEGLKPFRFYGPTCDSV 328
            K   AL    + + G +  L +       FP+    K GE     L      GPTCDS 
Sbjct: 289 KKSYTALERWVFTDVGKFSGLIETMDEAIKFPI-FTHKQGE-----LDKCVIAGPTCDSA 342

Query: 329 DHM--PGPFYLPESVDEGDYIEIGMLGAYGVAMN-TRFNGF 366
           D M     + LP  +  GD +     GAY    +   FNGF
Sbjct: 343 DIMYEHYSYGLPNDLAIGDRMYWLTAGAYTTTYSAVCFNGF 383