Pairwise Alignments

Query, 300 a.a., RarD family membrane permease from Caulobacter crescentus NA1000

Subject, 304 a.a., EamA family transporter RarD from Rahnella sp. WP5

 Score =  214 bits (545), Expect = 2e-60
 Identities = 109/269 (40%), Positives = 165/269 (61%), Gaps = 4/269 (1%)

Query: 20  YLLWGFLPLYFHLLAKLGVTSWEMIAHRSLWSVLWALGLVLIARQVGQVAQVLRQPKTLG 79
           YL+WG  P YF L+ +  V + E++ HR +WS  + L L+ ++R  G V +VL QPK +G
Sbjct: 17  YLIWGIAPAYFKLIKQ--VPADEILTHRVIWSFFFMLVLLSVSRSWGDVRRVLAQPKKIG 74

Query: 80  VLALTTLAIFSNWTIYVFAVNAGHVIEASLGYYINPLMNMAAGALLFRERMSTEGKVAIG 139
           +L +T L +  NW I+++A+N  H++EASLGY+INPL+N+  G L  RER  +    A+ 
Sbjct: 75  MLLITALLVGGNWLIFIWAINHNHILEASLGYFINPLVNVVLGMLFLRERFRSLQWFAVA 134

Query: 140 LAAVGVAIQTVALGHLPIVSLGLALTFCVYAILRKQVKADAQTGLFIECAYLALPGLAYV 199
           LA  GV +Q    G +P++++GL+LTF  Y +LRK++  D+QTG+ IE  +L      Y+
Sbjct: 135 LAFAGVLVQVWVFGSVPVIAIGLSLTFAFYGLLRKKIGVDSQTGMLIETLWLLPVAGIYL 194

Query: 200 WFLQSSGQGHFGDGA-SVTTLLALAGPATVVPLALFAWSARRLPLSAVGFLQFIAPTIQF 258
           +F+  S   +      S+  LL  AG  T +PL  F  +A RL LS +GF Q++ PT+ F
Sbjct: 195 FFIAHSQTSNLAANPWSLDLLLMAAGIITTIPLLFFTAAAARLKLSTLGFFQYLGPTLMF 254

Query: 259 LLGVAF-GEPFTPLRALSFVFIWLGVATF 286
           LL V F GE     + ++F FIW+G+  F
Sbjct: 255 LLAVVFYGETVNTSQLITFGFIWVGLLCF 283