Pairwise Alignments

Query, 300 a.a., RarD family membrane permease from Caulobacter crescentus NA1000

Subject, 297 a.a., protein RarD from Phaeobacter inhibens DSM 17395

 Score =  206 bits (525), Expect = 4e-58
 Identities = 118/295 (40%), Positives = 167/295 (56%), Gaps = 5/295 (1%)

Query: 2   PPHSQTESRSAYAAGVGCYLLWGFLPLYFHLLAKLGVTSWEMIAHRSLWSVLWALGLVLI 61
           P +  T    A+A  V  YL+WGFLPLY   LA +     E++AHR +WSV  A  L++I
Sbjct: 5   PENKDTPQGLAFA--VSAYLMWGFLPLYMKALAHMPAA--EVVAHRVIWSVPVAGVLLII 60

Query: 62  ARQVGQVAQVLRQPKTLGVLALTTLAIFSNWTIYVFAVNAGHVIEASLGYYINPLMNMAA 121
            R+   +   L  P+ L + A+T   I  NW IYV+++  GH ++A+LGYYINPL ++  
Sbjct: 61  LRRTRDLRAALTSPRVLMMGAVTAALISVNWGIYVWSIATGHALDAALGYYINPLFSVML 120

Query: 122 GALLFRERMSTEGKVAIGLAAVGVAIQTVALGHLPIVSLGLALTFCVYAILRKQVKADAQ 181
           GA+L  ER+S    VAIGLAA+ V +  +  G LP  ++GL L++  YA  +K +     
Sbjct: 121 GAVLLGERLSPAQLVAIGLAALAVLVLALDAGRLPWAAIGLTLSWGFYAFFKKSLPVGPN 180

Query: 182 TGLFIECAYLALPGLAYVWFLQSSGQGHFGDGASVTTLLALAGPATVVPLALFAWSARRL 241
            G  +E   L  P LAY+ +L  +G  HFG   S T LL   G  T VPL  +A  A+ L
Sbjct: 181 QGFMLEVLLLTPPALAYLAYLTVTGGAHFGGDFSDTALLLGCGVVTAVPLITYANGAKLL 240

Query: 242 PLSAVGFLQFIAPTIQFLLGV-AFGEPFTPLRALSFVFIWLGVATFAYGAWRKAK 295
            LS +G LQ+IAPT+ FL  V  FGE F   R ++F  IWL +  ++    R+ +
Sbjct: 241 RLSTIGILQYIAPTMIFLAAVFVFGEEFGRARMIAFPMIWLALVIYSVSLLRQMR 295