Pairwise Alignments

Query, 403 a.a., type II secretion pathway protein F from Caulobacter crescentus NA1000

Subject, 406 a.a., general secretion pathway protein F (RefSeq) from Shewanella loihica PV-4

 Score =  295 bits (754), Expect = 2e-84
 Identities = 156/403 (38%), Positives = 257/403 (63%), Gaps = 3/403 (0%)

Query: 1   MATFDYVALDLSGRTRRGQLKAVDEAAAADQLQRKRLAPVKIMASVAKPARV--GRFALG 58
           M  F+Y AL+  G+ ++G ++A     A  QL+  RL P++I   V K A+   G F+  
Sbjct: 1   MPAFEYKALNAQGKQQKGVVEADTARHARGQLRELRLMPLEITPVVEKEAKAKSGGFSFK 60

Query: 59  QGLSAKDRSMFTRQLATLTSVST-LEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLSD 117
           +G+S  + ++ TRQ+ATL +    +EEAL+ +  Q +K +L  ++  V + V+EGY L+D
Sbjct: 61  RGISVAELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLAD 120

Query: 118 AMGRPAKAFPPLYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVLAVV 177
           +M      F  LYRAMVA+GE SG L  +L+RLAD  E++QQ++ K+T A++YPIVL +V
Sbjct: 121 SMAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKTKMTQAMIYPIVLTLV 180

Query: 178 ACLVVAALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLIVVSAVVAVFAFL 237
           A  V+A L+  V+P+VV QF+ MGQ LP  T+ +I  S  ++ +G +++   +  V    
Sbjct: 181 AISVIAILLAAVVPQVVGQFEHMGQELPWTTQFLIASSDFVRDYGLIVIGVIIALVVGAK 240

Query: 238 RALRHRPFKLAVDRWLLRLPMIGRLIRDVHAARLARTLATMVASGLPVLEGLILTAGTVR 297
           + LR    ++  D  +L++P++GR+ + ++ AR ARTL+ + AS +P+L+ + + +  + 
Sbjct: 241 QLLRSAANRMKYDSAILKMPVVGRVSKGLNTARFARTLSILTASSVPLLDAMRIASEVLM 300

Query: 298 NAVLQAALDDMIAAIREGGALSVAMRRAEVFPPVLVYMTASGESSGRVEAMLMRAADYLE 357
           N  ++AA+++  A +REG +L  A+   ++FPP+++YM  SGE SG++E ML RAAD  +
Sbjct: 301 NVRVRAAVEEATARVREGTSLGAALANTKLFPPMMLYMITSGEKSGQLEQMLERAADNQD 360

Query: 358 REFETFTATLLSLLEPAIIVLLGGVVATIVLSILLPILQINNL 400
           REFE+     L + EP ++V +  VV  IVL+IL PIL++NN+
Sbjct: 361 REFESNVNIALGVFEPMLVVSMAAVVLFIVLAILQPILELNNM 403