Pairwise Alignments

Query, 403 a.a., type II secretion pathway protein F from Caulobacter crescentus NA1000

Subject, 422 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

 Score =  225 bits (574), Expect = 2e-63
 Identities = 129/402 (32%), Positives = 229/402 (56%), Gaps = 7/402 (1%)

Query: 1   MATFDYVALDLSGRTRRGQLKAVDEAAAADQLQRKRLAPVKIMASVAKPARVGRFALGQG 60
           + TF++   +  G+   G+L+    A    QL+ + + P K++   A+P     F     
Sbjct: 23  VVTFEWKGTNRDGKKTSGELRGTSPAEIKAQLKSQGVNP-KVVKKKAEPL----FKSDPK 77

Query: 61  LSAKDRSMFTRQLATLTSVST-LEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLSDAM 119
           + A D +M TRQ+AT+ +    +   L  +    +KP++++++G + A V  G  LSD++
Sbjct: 78  IKAMDIAMITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSDSL 137

Query: 120 GRPAKAFPPLYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVLAVVAC 179
               + F  LY  +V AGE SG+L A+ DR+A   E+ + +++KI  A+ YP  + VVA 
Sbjct: 138 KPHRQYFDDLYVDLVGAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVIVVAI 197

Query: 180 LVVAALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLIVVSAVVAVFAFLRA 239
            V   L++FV+P+  + F   G  LP  T++++ +S  LQ+  +  V+  VV++++F +A
Sbjct: 198 AVTTLLLLFVVPQFEDIFAGFGAELPAFTQMIVSISRWLQSSWYFFVIGIVVSIWSFKKA 257

Query: 240 -LRHRPFKLAVDRWLLRLPMIGRLIRDVHAARLARTLATMVASGLPVLEGLILTAGTVRN 298
            L+   F+  VD  +L++P+IG ++     AR ARTLAT  A+G+P+++GL   AG   N
Sbjct: 258 HLKSAGFRNKVDELVLKIPIIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGN 317

Query: 299 AVLQAALDDMIAAIREGGALSVAMRRAEVFPPVLVYMTASGESSGRVEAMLMRAADYLER 358
            V ++AL  +   +  G  ++VAMR   +FP +L+ M   GE SG ++ ML + A+  E 
Sbjct: 318 YVYRSALTKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKIANIYEM 377

Query: 359 EFETFTATLLSLLEPAIIVLLGGVVATIVLSILLPILQINNL 400
           + +     L SL+EP ++V++G +V  +++ + LPI Q+ N+
Sbjct: 378 QVDDAVDGLSSLIEPMMMVVIGTLVGGLIIGMYLPIFQMGNV 419