Pairwise Alignments

Query, 403 a.a., type II secretion pathway protein F from Caulobacter crescentus NA1000

Subject, 423 a.a., type IV pilus biogenesis protein PilC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  216 bits (551), Expect = 8e-61
 Identities = 131/401 (32%), Positives = 226/401 (56%), Gaps = 8/401 (1%)

Query: 3   TFDYVALDLSGRTRRGQLKAVDEAAAADQLQRKRLAPVKIMASVAKPARVGRFALGQGLS 62
           TF++  ++  G+   G+L+    A    QL+ + + P  +    A   ++G       ++
Sbjct: 25  TFEWKGVNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLG----DPKIT 80

Query: 63  AKDRSMFTRQLATLTSVST-LEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLSDAMGR 121
             D +M TRQ+AT+ +    L   +  +    +K K+++++  + + +  G  LSDA+  
Sbjct: 81  PMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDALRP 140

Query: 122 PAKAFPPLYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVLAVVACLV 181
             + F  LY  +VAAGE SG+L  + DR+A   E+ + +++KI  A+ YP  + +VA LV
Sbjct: 141 HRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILV 200

Query: 182 VAALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLIVVSAVVA-VFAFLRAL 240
            A L++FV+P+  + F   G  LP  T+LV+ +S GLQ+  W I + A+VA VF F+RA 
Sbjct: 201 TALLLLFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQS-SWYIFLGAIVAGVFLFVRAH 259

Query: 241 RHRPF-KLAVDRWLLRLPMIGRLIRDVHAARLARTLATMVASGLPVLEGLILTAGTVRNA 299
           R+    +  VD  +L++P IG ++     AR ARTLAT  A+G+P+++GL   AG   NA
Sbjct: 260 RNSQIVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNA 319

Query: 300 VLQAALDDMIAAIREGGALSVAMRRAEVFPPVLVYMTASGESSGRVEAMLMRAADYLERE 359
           V + A+  +   +  G  ++VAMR   +FP +L+ M   GE SG ++ ML + +   E +
Sbjct: 320 VYRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQ 379

Query: 360 FETFTATLLSLLEPAIIVLLGGVVATIVLSILLPILQINNL 400
            +     L SL+EP ++V++G VV  +++++ LPI Q+  +
Sbjct: 380 VDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKV 420