Pairwise Alignments

Query, 403 a.a., type II secretion pathway protein F from Caulobacter crescentus NA1000

Subject, 407 a.a., general secretion pathway protein F (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  303 bits (776), Expect = 6e-87
 Identities = 166/404 (41%), Positives = 261/404 (64%), Gaps = 4/404 (0%)

Query: 1   MATFDYVALDLSGRTRRGQLKAVDEAAAADQLQRKRLAPVKIMASVAKPARV--GRFAL- 57
           M  F+Y ALD  G+  +G ++A     A  QL+ +RL P+ I+    K A+     FAL 
Sbjct: 1   MPAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRLMPLDILPVTEKEAKAKSSGFALF 60

Query: 58  GQGLSAKDRSMFTRQLATLTSVST-LEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLS 116
            +G+S  + ++ TRQ+ATL +    +EE+L+ +  Q +K +L  +I  V + V+EGY L+
Sbjct: 61  KRGISVAELALITRQIATLVAAGLPIEESLKAVGQQCEKDRLASMIMAVRSRVVEGYSLA 120

Query: 117 DAMGRPAKAFPPLYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVLAV 176
           D++      F  LYRAMVA+GE SG L  +L+RLAD  E++QQ+++K+  A++YPI+L +
Sbjct: 121 DSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTL 180

Query: 177 VACLVVAALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLIVVSAVVAVFAF 236
           VA  VV+ L+  V+PKVV QF+ MG  LP  TR +I  S  +Q +G L+V+   + +  F
Sbjct: 181 VAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQNYGLLVVLVLGILLVVF 240

Query: 237 LRALRHRPFKLAVDRWLLRLPMIGRLIRDVHAARLARTLATMVASGLPVLEGLILTAGTV 296
            R L+   FK+    +LL++P+IGR+ + ++ AR ARTL+ + AS +P+L+G+ + +  +
Sbjct: 241 QRLLKSPIFKMKFHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVL 300

Query: 297 RNAVLQAALDDMIAAIREGGALSVAMRRAEVFPPVLVYMTASGESSGRVEAMLMRAADYL 356
           +N  ++AA+DD  A +REG +LS A+   ++FP +++YM ASGE SG++E ML RAAD  
Sbjct: 301 QNMRVRAAVDDATARVREGTSLSTALTNTKLFPAMMLYMIASGEKSGQLEDMLERAADNQ 360

Query: 357 EREFETFTATLLSLLEPAIIVLLGGVVATIVLSILLPILQINNL 400
           +REFE+     L + EP ++V + GVV  IV++IL PIL +NNL
Sbjct: 361 DREFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILALNNL 404