Pairwise Alignments

Query, 491 a.a., type II secretion pathway protein E from Caulobacter crescentus NA1000

Subject, 569 a.a., type IV-A pilus assembly ATPase PilB (RefSeq) from Shewanella sp. ANA-3

 Score =  358 bits (920), Expect = e-103
 Identities = 213/484 (44%), Positives = 288/484 (59%), Gaps = 18/484 (3%)

Query: 12  KRNGVVLLSLGERAVIGVREGYDPMALVEIRRAVG----APLAIEPMTAPVFDRKFSEVY 67
           K   + L   G R  I   +  +  AL E + + G    A L  E   A   ++   E  
Sbjct: 89  KHRCLPLFKRGNRLYIATSDPTNIAALEEFQFSAGLHAEAILVEEDKLAKALEKVLEEDI 148

Query: 68  AGAGLATASSADSLDLEGGLGLLLEDMPAAADLLDPQDDAPVIRLINGLIAEAVRLGASD 127
            G  L   S  D   L  G+ +   D     +  +  DDAP++  IN ++ +A+R GASD
Sbjct: 149 TGLDL---SGMDEAAL-AGIEVTDTDKRQEENAGEASDDAPIVIYINKILTDAIRKGASD 204

Query: 128 IHIEPFEKALIVRLRIDGVLTEVLSLSPRIAAMLVSRVKVMAKLDIAEKRVPQDGRISLA 187
           +H EP+EK   +R RIDG+L EV      +A  L +R+KVM+KLDIAE+RVPQDGRI + 
Sbjct: 205 LHFEPYEKRYRIRFRIDGILHEVSEPPISLAGRLSARLKVMSKLDIAERRVPQDGRIKMK 264

Query: 188 LGG-KSLDVRVSTLPARMGERVVMRILDKDQAGLRLSDLGMSPDVLSALETAVREPHGII 246
           L   KS+D RVSTLP   GE++VMRILD   A L +  LG  PD        + +P G+I
Sbjct: 265 LSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEPDQEKLYLEMLAKPQGMI 324

Query: 247 LVTGPTGSGKTTTLYAALAVLNDNSRNILTIEDPVEYAVHGIGQTQVNTKVGMTFAAGLR 306
           LVTGPTGSGKT +LY  L +LN   RNI T EDPVE  + G+ Q  +N K G+TFA+ LR
Sbjct: 325 LVTGPTGSGKTVSLYTGLNILNTAERNISTAEDPVEINLEGVNQVHINLKAGLTFASALR 384

Query: 307 AILRQDPDVVMVGEIRDSETAQIAVQASLTGHLVLSTVHTNDAAGAVVRLRDMGVEPFLL 366
           + LRQDPDVVMVGEIRD ETA+IA++A+ TGHLVLST+HTN AA  + RL +MGV  + +
Sbjct: 385 SFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLINMGVPGYNI 444

Query: 367 ASTLRLVIAQRLVRRLCEHCRTPEPADAATAALVG-----LPEGEILYRPVGCAHCGHTG 421
           AS++ L+IAQRL RRLC  C+  E         +G     + +G   ++PVGC HC   G
Sbjct: 445 ASSVNLIIAQRLARRLCTECKQAEQIPEHELQRLGFTDEQIAQGFTTFKPVGCEHCS-GG 503

Query: 422 YQGRIGVYEALRVDDHLRRLI--GGNASE-QEITEAGLDRRLGQEARNYVLAGLTTVEEA 478
           Y+GR+G+YE +++ D + R I  GGN+ +  +  +A   R L Q     VL G+T++ E 
Sbjct: 504 YKGRVGIYEVMKMSDEIARTIMEGGNSLQIADQAKAQGMRDLRQSGLLKVLQGVTSIAEI 563

Query: 479 LRIT 482
            R+T
Sbjct: 564 NRVT 567