Pairwise Alignments

Query, 211 a.a., RNA polymerase sigma factor from Ralstonia sp. UNC404CL21Col

Subject, 192 a.a., RNA polymerase sigma-24 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.6 bits (179), Expect = 2e-18
 Identities = 52/169 (30%), Positives = 78/169 (46%), Gaps = 2/169 (1%)

Query: 14  DAQRFAQAVLPHVDAAYNLARWLSGDAQDADDIVQEACLRAFRLFGGFRGGDG-RPWLLA 72
           D   F   VL +     +L      +  D  D+ QEA ++A+R    FRG      WL  
Sbjct: 18  DKNAFNLLVLKYQSKVISLISRYVRNQADVTDVAQEAFIKAYRALPNFRGESAFYTWLYR 77

Query: 73  IVRNTWFSECARR-KQAPAQPWDDDAAAGQAHDDSASYGIDPAALLARIDDVRRVHVALA 131
           I  NT  +    + ++APA   D + A      D+      P  L+   +  + V   L 
Sbjct: 78  IAVNTAKNYLVSQGRRAPANDVDAEDAEYYEGSDALKEFASPERLMLSDEIKKVVFETLE 137

Query: 132 QLPVPYREVLVLRELEDLPYRDIAAVVDAPIGTVMSRLARARQQLARLL 180
            LP   R  + LREL+ + Y DIA ++D P+GTV SR+ RAR+ + + L
Sbjct: 138 TLPEELRMAISLRELDGMSYEDIAIIMDCPVGTVRSRIFRAREAIDKKL 186