Pairwise Alignments

Query, 1079 a.a., error-prone DNA polymerase from Ralstonia sp. UNC404CL21Col

Subject, 1116 a.a., DNA polymerase III, alpha subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  780 bits (2015), Expect = 0.0
 Identities = 469/1130 (41%), Positives = 649/1130 (57%), Gaps = 111/1130 (9%)

Query: 10   LPAYAELHCISNFTFLTGASHPYELVERAKLYGYQALALTDECSVAGTARALVASKEY-- 67
            +  YAEL   SNFTFLTGASHP ELV RA   G +A+A+TD  SVAG  RA  A KE   
Sbjct: 1    MTGYAELCVTSNFTFLTGASHPEELVTRAAELGLKAIAITDRNSVAGVVRAFSALKELAR 60

Query: 68   ------------ELKLIIGSRFTVRNADGE-----------------------PWLRLVL 92
                        E   ++ SR    ++  +                       P  R+VL
Sbjct: 61   LREEARAASDGAEAGPVVRSRQVTDHSSRQTMQHMPAGDAPRIPPDMVLPKLIPGARIVL 120

Query: 93   ---------LAQNIEGYGNLSEIITHARLAAPKGEYRLLADDLAAPKGELAHLRGVPDCL 143
                     L  +I  +  L+ +++  +  A KGE  L   DL         L      +
Sbjct: 121  TDSPVDWLALPADIAAWSRLTRLLSLGKRRATKGECHLTRKDL---------LDWGEGMV 171

Query: 144  AILLPDYDPDPQQLLAQAWWCQ-----RVFGDRLSIALELPLRHADDRHRGTVGAVSEQI 198
             I LP   PDP +  A+A         R+F  +  +         D      +  +++  
Sbjct: 172  LIALP---PDPMEHPARASLSDLRHMLRIFPGQCFLGAAPRYDGRDPTRLDQLARIAQDT 228

Query: 199  DVPMVATSGVQMHTRQRKPLHDVLTAIRLSKPLSECGLELAPSAEQAMRTRVQLSYLYQG 258
             +P+VA   V MH   R+PL DVLT +R    +   G     + E  +++  +++ ++  
Sbjct: 229  GLPLVALGEVMMHRSSRRPLADVLTCLREGCTIDTIGERRLTNGEHRLKSPAEMARMFH- 287

Query: 259  ERGKRILRRTVELAALCNFSLDEIQYEYPSEVVPEGMTPAEYLHAETLAGAARRYPNGVS 318
             R    +RRT+E+A  C F LD+++Y+YP E   +G      L   +  G   RYP G  
Sbjct: 288  -RYPAAIRRTLEIADRCAFRLDDLRYQYPDEA-RDGEPAQARLERLSREGLHWRYPEGPP 345

Query: 319  EKVREQIQEELGLIAELGYEPFFLTVYDVVKFARNEGILCQGRGSAANSAVCYCLGITEV 378
             ++  ++ +EL LI E+GY P+FLTV+D+V FAR++GILCQGRGSAANS VCY LG+TEV
Sbjct: 346  ARIVTRVDKELKLIGEMGYAPYFLTVHDIVAFARSKGILCQGRGSAANSVVCYLLGVTEV 405

Query: 379  NPDSGNTLFARFLSRARNEPPDIDVDFEHQRREEVIQYIYKKYGVTRTALAAALITYRTR 438
             P+S   +F RF+S+ R EPPDIDVDFEH+RREEVIQ+IY++YG  R  L A +I +R+R
Sbjct: 406  PPESITLIFERFISKERGEPPDIDVDFEHERREEVIQWIYEQYGRHRAGLTATVIHFRSR 465

Query: 439  SALRDVGRALGIDLGIIEQVAKGQAW-WDSRKEFVQRAGQQGLDPESPLVLRWAQLVDQL 497
            +A+R+VG+ +G+   ++ +++ GQ W W S      R    G+DP    V   A+L+ ++
Sbjct: 466  AAIREVGKVMGLSQDVVARLS-GQIWGWSSSAPGEDRMRDAGIDPADGRVALAAKLIGEI 524

Query: 498  RGFPRHLSQHVGGFVIAQGKLSRLVPIENAAMENRRVIQWDKDDLESLRLLKVDVLALGM 557
             GFPRHLSQHVGGFVI  G+L  L PIENAAME+R VI+WDKDD+++L LLKVDVLALGM
Sbjct: 525  IGFPRHLSQHVGGFVITHGRLDELCPIENAAMEDRTVIEWDKDDIDALGLLKVDVLALGM 584

Query: 558  LTAIRRTLDMVDALPGRREHYGATTKLAMQNLHDGDKKTYDMICRAETIGVFQIESRAQQ 617
            LT IR+   ++D      +H     +L + N+   D   YDM+C+A+ +GVFQ+ESRAQ 
Sbjct: 585  LTCIRKAFGLLD------DH--RHLQLTLANVPPEDPVVYDMLCKADAVGVFQVESRAQL 636

Query: 618  SMLPRLRPREYYDLVIQVAIVRPGPIQGGMVHPYLQRREAKRNGNTDCVTYPGPEVKAVL 677
            + LPR++PR++YDLV +VAIVRPGPIQGGMVHP++ RR+ K       V   GP +  VL
Sbjct: 637  NFLPRMQPRKFYDLVCEVAIVRPGPIQGGMVHPFINRRQGKEK-----VEDLGPAMMEVL 691

Query: 678  ERTLGVPIFQEQVMEIAMKAGDFTPDDADRLRRDMAAWKRKGNLTQHQERLVHAMVEKRG 737
             RT GVP+FQEQ M+IA+ A  F+  +ADRLRR +A +KR G +   +ER +  M+  R 
Sbjct: 692  GRTYGVPLFQEQAMQIAVVAAGFSAAEADRLRRSLATFKRMGTIGAFRERFISGML-ARS 750

Query: 738  YDPAFVEALCKQMEGFAEYGFPESHAAGFAKLAYVSSFLKCHEPAAFFAALLNSQPMGFY 797
            Y+  F E    Q+EGF  YGFPESHAA FA+L Y+S++LK H PA F  ALLNSQPMGFY
Sbjct: 751  YEAGFAERCFAQIEGFGSYGFPESHAASFARLVYISAWLKRHHPAVFTCALLNSQPMGFY 810

Query: 798  SPSQLVQEARRSHVRVLPADVTASVWDSTLHLRADGEVGENGLVQPDIRLGLNRIRGMRK 857
            +P+QLV++AR   V +    V  S WD TL  R DG +         +RLG  +I+GMR+
Sbjct: 811  APAQLVRDAREHGVEIRAISVNHSAWDCTLEPRGDGALA--------LRLGFRQIKGMRE 862

Query: 858  PAAERIEAARAQAPFTSVEDLAHRAALDRHDLNVLAAANALKSLAGHRRQALWQTLALQE 917
              A  IEAAR    +  VE L  RA +    L  LA  +A  SL  +RR ALW   AL+ 
Sbjct: 863  EDANWIEAARGNG-YPDVEGLWRRAGVRPDALERLAEGDAFASLGLNRRDALWAARALRG 921

Query: 918  PGHDHALLRQAR-PVEAPLELPAPPIGEEVMADYGSLGLSLQSHPLRLLRARL------E 970
            P              E  + LPA  +G+EV+ DY +L LSL++HP+ LLR RL      E
Sbjct: 922  PNPLPLFGADGEGGAEPEVALPAMTLGQEVIEDYLALRLSLRAHPMELLRPRLPESLPHE 981

Query: 971  RMRFATAATLAGYRNGQLARACGIVTVRQRPGTANGTIFVSIEDETGAINVILWPHLIER 1030
            R+  AT                G+V  RQRPGTA+G IF+++EDETG  NV++W  + E 
Sbjct: 982  RLDRATGR----------VTVTGLVITRQRPGTASGVIFLTLEDETGVSNVVVWSRVYEA 1031

Query: 1031 QRREVLNAQLLGVYGKWQCERETRHLVAQHLVDLTPL---LGRLATSSRD 1077
             R+ V+  +LL V G+ + E +  H++A+ + D++P+   LGR AT + D
Sbjct: 1032 FRKAVIAGRLLRVTGRIEREGQVVHVIAERIEDISPMLSSLGRPATDAGD 1081