Pairwise Alignments

Query, 326 a.a., tyrosine-type recombinase/integrase from Ralstonia sp. UNC404CL21Col

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 55.8 bits (133), Expect = 1e-12
 Identities = 67/298 (22%), Positives = 118/298 (39%), Gaps = 28/298 (9%)

Query: 37  RGYRESSATVYRAMWRKWLRWAQSHQRALADWSAADIAAF---LDESGLTKLHRYRYARL 93
           RG  E++   YR    K L W   +Q  L   S A +  +   L E       + R    
Sbjct: 23  RGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSEQNYKPTSKARMLSA 82

Query: 94  IERVFHQIEQQRTGTHNPASTAVQQKLAEGENDPTTFLSAAERAAIEASLEVGAQASEAA 153
           I R+F  + +++    +P++  V  KL      PT        A +EA L        A 
Sbjct: 83  IRRLFQYLHREKVRADDPSALLVSPKL------PTRLPKDLSEAQVEALLS-------AP 129

Query: 154 ANASAFKLARDRALVAVCHGAGLKVAQVQSLLLRQVDEALETITVERPRGPSYRAPVLQA 213
              S  +L RD+A++ + +  GL+V ++ SL +  +      + V    G     P+ + 
Sbjct: 130 DPQSPLEL-RDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGEN 188

Query: 214 VRPALAAWLAVRAHAEVPGER---VFVADASGRVMHAASVYRRVE--AWLAALPALLHRS 268
               +  +L  +  + + GE+   +    + G+ M   + + R++  A +A +       
Sbjct: 189 AIEWIETFLQ-QGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDV----- 242

Query: 269 ERLSPQTLRNGYTAALFDAGADPAEVGYALGLRDATSAWRLRAAYAEWQAAAHPDRQP 326
           E+LSP  LR+ +   L + GAD   V   LG  D ++         E     H +  P
Sbjct: 243 EKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHP 300