Pairwise Alignments

Query, 542 a.a., type VI secretion system tip protein TssI/VgrG from Ralstonia sp. UNC404CL21Col

Subject, 954 a.a., type VI secretion protein from Herbaspirillum seropedicae SmR1

 Score =  178 bits (451), Expect = 1e-48
 Identities = 143/529 (27%), Positives = 241/529 (45%), Gaps = 67/529 (12%)

Query: 69  KPRVKGIQRAVVTGPENQEVWTNDFGCVKVQFEWDR-----------YGQYDQ------- 110
           KP  +G Q A+VTG  +  V T+    VKVQF W R            G  D        
Sbjct: 424 KPTARGTQTALVTGAADAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNLDDKDGNANG 483

Query: 111 --NSSPWIRVANGWSGDQFGAMHIPRIGQEVLVDYLNGDPNTPIIIGRVPNQLNLPPWQL 168
             +S  WIRVA   SG  +G+  IPR+G EVLVD++ GD + P+++ ++ N  + PP+  
Sbjct: 484 NDSSGTWIRVAEAQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYNGSDAPPFPA 543

Query: 169 PG----QHA--LSGIASKELFGKRRNHLLMDDTQGQIQAQLSSDHQTSQLNLGYLT-GVP 221
                  HA  +SG  S    G   N  ++DDTQ Q++ +L+S    SQLNLG+L     
Sbjct: 544 GADSGINHAGSISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASSTAKSQLNLGHLVEQAD 603

Query: 222 GNPGRKDQRGEGFDLRTDGQGAIRGAKGLLLTTEGQ----IAAVGGHLDRQEFIRCMEAA 277
               R   RG+GF+LR+D  G +RG +GLLL+T  +     +  G  +D    I  ++ A
Sbjct: 604 TGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMDAAGAIAQLKGA 663

Query: 278 LEAAKSLGEYSSQHEALKT--------------DAGPQSTLTKAIEEWDAGANNHQDKPG 323
              A+++ + ++Q +AL +              D   Q     ++   DA  ++   +  
Sbjct: 664 KSLAQTMSDSATQQQALSSTQALQAKTDFLALIDPSDQGKHPASVNGQDALKSDGSTRNT 723

Query: 324 RGGQPLLGAYAPAGIGLATPKSLT--------SYAGQHIDTVSKLNQQQTAGQQYLVNAG 375
              QP +  +A A + + +P S+          YA +++   ++ +   +A       AG
Sbjct: 724 DAAQP-VEKFAKAAVLMDSPSSINWTSNASTLLYAAENLQWTTQGDVHWSAADTASAAAG 782

Query: 376 TGISLFAHSGEWKGIAHQGQLVLQAQQKSITSNAKQDVVVTATDGTIVLNAKTGITLMSG 435
              S ++H G  +  A  G + LQA   ++   A +DV VT+ + +I + A+  I L +G
Sbjct: 783 KAASFYSHDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKARQKIVLQAG 842

Query: 436 NAGIRIAGGKVEAFGPTLIHLHTGNFDVPPAQGIDG---ALPQFDSGDTKRSF----ALV 488
            A + + GG +    P    +       P    +     ALP     DTK        +V
Sbjct: 843 QASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALP-----DTKYKLFDEAFVV 897

Query: 489 REIDGEPISSTAYTLTTADGSVVGNGVAADGVTPESTLQQIEHLQAAFK 537
           ++ +G P+S   Y + ++ G  +    A DG++   + +  E+++ A +
Sbjct: 898 KDPNGTPLSDIPYRIKSSAGDQLAT-TAKDGMSERVSTEASENVEFAME 945