Pairwise Alignments

Query, 937 a.a., DNA polymerase I from Ralstonia sp. UNC404CL21Col

Subject, 1004 a.a., DNA polymerase I from Sinorhizobium meliloti 1021

 Score =  685 bits (1768), Expect = 0.0
 Identities = 423/1005 (42%), Positives = 571/1005 (56%), Gaps = 82/1005 (8%)

Query: 8    LLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKLRND-------YPAKYSAC 59
            L LVDGS +++RA+HA+P L R  +G P  A+ G  NML KL  D           + A 
Sbjct: 7    LFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVTPTHLAV 66

Query: 60   IFDAKGKTFRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVIEGVEADDVIGT 119
            IFD   KTFR+ LY  YK +R   P+DL  Q   I  A RA   P +  EG EADD+I T
Sbjct: 67   IFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEADDLIAT 126

Query: 120  LAERAAREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVDYL 179
             A  A   G    + + DKDL QLV   V++ ++M ++ +    V  K+GVPPE+++D  
Sbjct: 127  YARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPEKMIDLQ 186

Query: 180  SLIGDTVDNVPGVPKVGPKTAVKWLTEFGSLDNVIARAGEIKGVVG-DNLRNTLEWLPKG 238
            ++ GD+ DNVPG+P +GPKTA + L E+G LD ++ARAGEIK     +++    +     
Sbjct: 187  AMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANADLARLS 246

Query: 239  RELLTVKLDCDLSKEVPTFDALIDGGEDKSKLVDFFSRYGFKTWLREASGDALPDTRSVG 298
            REL+T+K D  L  +VP  D  +D  +D  KL+ F     F T  R  +     D  ++ 
Sbjct: 247  RELVTLKKDTPL--DVPPEDFRLDS-QDGPKLIAFLKAMEFTTLTRRVAAATDTDAEAIE 303

Query: 299  AAR----------------------------RAATPVKNYAGEAAQ-------------- 316
             A                              +ATP +  A  AA               
Sbjct: 304  PAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADTTGA 363

Query: 317  -----LQAQANLFDVEAPPDEIQYETVTTEAQLESWMQRLDEVDLVCIDTETTSIDPMLA 371
                  +A+A  F  +AP D   Y T+     LE W+    E  LV  DT+ TS D M A
Sbjct: 364  TPTGLAEARAAYFG-KAPFDHSGYRTIRDIDTLERWIADAREAGLVGFDTQATSPDAMRA 422

Query: 372  QLVGISLSVKPG---------EACYIPVAHRGPD---VAGLDAAAQLSRDTVLARMKLWL 419
             LVG SL+V             A Y+P+AH+      + G    +Q+     L+R+K  L
Sbjct: 423  DLVGFSLAVADYANDPSGSRIRAAYVPLAHKSGVSDLLGGGPVDSQVPGRETLSRLKELL 482

Query: 420  EDESRKKVGQHLKYDAHVLANHGIALRGIEHDTMLESYVLESHRN-HGMDALAERVLHLK 478
            ED S  KVGQ+LKY   V+  HGIA+R  + DTML SYVL++    HGMD+LAER L   
Sbjct: 483  EDPSVLKVGQNLKYGYLVMKRHGIAMRSFD-DTMLMSYVLDAGNGAHGMDSLAERWLGHT 541

Query: 479  TITYESVCGKGASQIGFDEVPLDRATEYAAEDADITLRLHRTLFPKVSEDDKLRYVYEQI 538
             I Y+ V G G S + FD V +D+AT YAAEDADI LRL   L P+++     R VYE++
Sbjct: 542  PIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTR-VYERL 600

Query: 539  EMPTSIVLQKMERNGVLIDAERLAKQSNELGLRLIDLEAEAHKLAGQPFNLGSPKQIGDI 598
            E P   VL  ME  G+ +D + L++ S EL      LE E ++LAG+ F +GSPKQ+GDI
Sbjct: 601  ERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDI 660

Query: 599  FFNQMKLPIIKKTASGAPSTDEEVLQKLAE-DYPLPKLLLDYRGLAKLKSTYTDKLPKMV 657
             F +M LP   KT +G  ST  +VL+ LA   + LP+ ++D+R L KLKSTYTD LP  V
Sbjct: 661  LFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFV 720

Query: 658  NPRTGRVHTTYGQATAVTGRLASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQ 717
            +P T RVHT +  A   TGRL+S+DPNLQNIP+RT EGR+IR AF+A  G  +VSADYSQ
Sbjct: 721  HPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQ 780

Query: 718  IELRIMAHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQ-RRVAKVINFGLIYG 776
            IELR++AH++    L +AF +G D+H  TA+E+F V P++  P + RR AK INFG+IYG
Sbjct: 781  IELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGV-PVDGMPSEIRRRAKAINFGIIYG 839

Query: 777  MSAFGLASNLGIGRDAAKLYIDRYFARYPGAASYMDETRQSARERGYVETVFGRRLWLPD 836
            +SAFGLA+ L I R  A  YI RYF R+PG   YM+ T+  ARE GYVET+FGRR   PD
Sbjct: 840  ISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPD 899

Query: 837  INGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQGWLEAEAMRSRLVMQVHDELVLE 896
            I   N   R   ERA+INAP+QG+AAD+I+ +M+ ++  LEA  + +R+++QVHDEL+ E
Sbjct: 900  IRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFE 959

Query: 897  VPQDE----LAVVRERLPELMCSVATLRVPLVAEVGVGANWEEAH 937
            V   E    + V+   +         +RVPL  +     NW+EAH
Sbjct: 960  VEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004