Pairwise Alignments

Query, 937 a.a., DNA polymerase I from Ralstonia sp. UNC404CL21Col

Subject, 923 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

 Score =  952 bits (2462), Expect = 0.0
 Identities = 497/942 (52%), Positives = 662/942 (70%), Gaps = 39/942 (4%)

Query: 8   LLLVDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACIFDAKGKT 67
           L+LVDGSSYLYRAY+A P L N +G  TGA+YG+VNMLR L + Y     A +FDAKG T
Sbjct: 9   LILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYRPTQMAVVFDAKGPT 68

Query: 68  FRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVIEGVEADDVIGTLAERAARE 127
           FR+++Y  YK HR PMPDDLR+QI P+H  ++ALG P++ I GVEADDVIGT+A +A  E
Sbjct: 69  FRNEMYQEYKAHRPPMPDDLRSQIAPLHRIIKALGIPLISIPGVEADDVIGTIAIQAGNE 128

Query: 128 GVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVDYLSLIGDTVD 187
           G   ++STGDKD+AQLVN+H+TL+NTMT+  L P  V  KFGV PE I+D L+++GD  D
Sbjct: 129 GRSVLISTGDKDMAQLVNEHITLINTMTDTILGPEEVATKFGVGPELIIDLLAMMGDKAD 188

Query: 188 NVPGVPKVGPKTAVKWLTEFGSLDNVIARAGEIKGV-------VGDNLRNTLEWLPKGRE 240
           N+PG+P VG KTA+  LT  G +  ++A    +  +       +   +R+  E L    +
Sbjct: 189 NIPGLPGVGEKTALAMLTGAGGVAKLLAEPDCVTDLGFRGAKTMAAKIRDNAEMLELSYK 248

Query: 241 LLTVKLDCDLSKEVPTFDALIDGGEDKSKLVDFFSRYGFKTWLREASGDALPDTRSVGAA 300
           L T+K D  L ++   +  L     ++ +L+  +    FK WL E   +  P        
Sbjct: 249 LATIKTDVTLEQD---WHQLSLSEPNRDELIACYGEMEFKRWLAEVLDNKSP------LG 299

Query: 301 RRAATPVKNYAGEAAQLQAQANLFDVEAPPD---EIQYETVTTEAQLESWMQRLDEVDLV 357
            +AA P             QAN    E+P     E QY T+ TE++L++W+ +L + +L+
Sbjct: 300 TKAAAP-------------QANQETTESPAAAVIETQYHTLLTESELDAWLDKLSKAELI 346

Query: 358 CIDTETTSIDPMLAQLVGISLSVKPGEACYIPVAHRGPDVAGLDAAAQLSRDTVLARMKL 417
            +DTETTS+D M A+LVG+S +++ G+A Y+P+ H  P      A +QL R+  LA++K 
Sbjct: 347 AVDTETTSLDYMQAELVGLSFAIEAGKAAYLPLGHDYPG-----APSQLPREATLAKLKP 401

Query: 418 WLEDESRKKVGQHLKYDAHVLANHGIALRGIEHDTMLESYVLESHRN-HGMDALAERVLH 476
            LE+   KKVGQ+LKYD  VLAN GI L+G+  DTMLESYV  S  + H MD LA + L 
Sbjct: 402 LLENPDIKKVGQNLKYDMSVLANAGIQLKGVAFDTMLESYVFNSVASRHDMDGLALKYLG 461

Query: 477 LKTITYESVCGKGASQIGFDEVPLDRATEYAAEDADITLRLHRTLFPKVSEDDKLRYVYE 536
            K I++E + GKGA Q+ F+++ L++A  YAAEDADITLRLH+ L+P++S+++ L  V+ 
Sbjct: 462 HKNISFEEIAGKGAKQLTFNQIALEQAAPYAAEDADITLRLHQHLWPRLSKEEGLESVFT 521

Query: 537 QIEMPTSIVLQKMERNGVLIDAERLAKQSNELGLRLIDLEAEAHKLAGQPFNLGSPKQIG 596
           ++E+P   VL  +ER GVLID+  L +QS EL  ++ +LE  AH++AG+PFNL S KQ+ 
Sbjct: 522 ELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKIDELEQHAHEIAGEPFNLSSTKQLQ 581

Query: 597 DIFFNQMKLPIIKKTASGAPSTDEEVLQKLAEDYPLPKLLLDYRGLAKLKSTYTDKLPKM 656
           ++FF ++  P+IKKT  GAPST EEVL +LA DYPLPK++L++R L KLKSTYTDKLP M
Sbjct: 582 ELFFTKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKIILEHRSLTKLKSTYTDKLPLM 641

Query: 657 VNPRTGRVHTTYGQATAVTGRLASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYS 716
           +N RTGRVHT+Y QA A TGRL+S+DPNLQNIP+RTEEGRRIR+AF+APEG  I++ADYS
Sbjct: 642 INGRTGRVHTSYHQANAATGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGKRILAADYS 701

Query: 717 QIELRIMAHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYG 776
           QIELRIMAHLSQDEGL+RAF EG+D+HRATAAEVF+V    VT +QRR AK +NFGLIYG
Sbjct: 702 QIELRIMAHLSQDEGLLRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYG 761

Query: 777 MSAFGLASNLGIGRDAAKLYIDRYFARYPGAASYMDETRQSARERGYVETVFGRRLWLPD 836
           MSAFGLA  L I R+ A+ YID YF RYPG   YM+ETR  A E+GYV T+FGRRL+LP+
Sbjct: 762 MSAFGLARQLDIPRNEAQSYIDTYFKRYPGVLKYMEETRAMASEQGYVSTLFGRRLYLPE 821

Query: 837 INGGNGPRRQAAERAAINAPMQGTAADLIKLSMLAVQGWLEAEAM-RSRLVMQVHDELVL 895
           I   N  RRQAAERAAINAPMQGTAAD+IK +M+A+Q W++ E     +++MQVHDELV 
Sbjct: 822 IRDRNAMRRQAAERAAINAPMQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVHDELVF 881

Query: 896 EVPQDELAVVRERLPELMCSVATLRVPLVAEVGVGANWEEAH 937
           EV  D+   ++E++ ELM + A+L VPL+AE G+G NW++AH
Sbjct: 882 EVDADKADALKEKVCELMAAAASLDVPLLAEAGLGDNWDQAH 923