Pairwise Alignments

Query, 242 a.a., amino acid ABC transporter permease from Ralstonia sp. UNC404CL21Col

Subject, 596 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  156 bits (394), Expect = 1e-42
 Identities = 88/235 (37%), Positives = 137/235 (58%), Gaps = 4/235 (1%)

Query: 3   YHWNWGVFFTEAAQNQTYLDW-LLAGLKTTVVLGLSSWIIALVIGSVLGVLRTVPNKWLS 61
           Y + W + FT      T+L   +L GL  TV + L S  +AL +G+VLG+ R      L 
Sbjct: 35  YQFQWDILFTRNTTYGTHLGLEILKGLGVTVRISLISSALALGLGTVLGIARLSLFAPLR 94

Query: 62  GLAAAYVELFRNIPLIVQLFIWYFVVPELVPGGDYIKQMNPNTSM-FLCAMLCLGTFTAA 120
             A A VE FRN PL+VQLF WYF  P ++P  + I+++    +  F CA + L  +T+A
Sbjct: 95  LTATAVVEFFRNTPLLVQLFFWYFAFPAILP--ENIRELLFTGNFEFWCATIGLSVYTSA 152

Query: 121 RVCEQVRSGINSLPRGQRNAGLAMGFTLAQTYRYVMLPMSFRIIVPPLTSEFLNIFKNSA 180
            + E +R+G+ S+P+G   A  + G    Q  R ++LPM+FR I+PPL SEFLN  KNS+
Sbjct: 153 FMAEVIRAGLQSIPKGLLEAAYSSGLNYVQVLRTIILPMAFRAIIPPLGSEFLNNMKNSS 212

Query: 181 VASTIGLLELAAQGRQLVDYTAQPYESFIAVTLMYMLINLTVMGLMRWVEARSRL 235
           +A  +G+ EL  Q +Q+   T + +E+  A T++Y+ ++L +  ++  V  + RL
Sbjct: 213 LAMVVGVAELTWQSQQVESLTFKGFEATSAATVLYLSLSLLISFILNGVNGKMRL 267



 Score =  106 bits (264), Expect = 1e-27
 Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 31/231 (13%)

Query: 3   YHWNWGVFFTEAAQNQTYLDWL------------LAGLKTTVVLGLSSWIIALVIGSVLG 50
           Y++NWGV    A   +T L W             L GL  ++++ + +  ++  IG V+G
Sbjct: 356 YNFNWGVI---ADNLRTLLIWHFPNGQSDELFMGLGGLAYSLLMAVIAISVSFFIGLVVG 412

Query: 51  VLRTVPNKWLSGLAAAYVELFRNIPLIVQLFIWYFVVPELVPGGDYIKQMNPNTSMFLCA 110
           + RT  N+        Y+EL R  PLI+ +F  YF +P L          N   ++F  A
Sbjct: 413 IGRTSDNRICRIPCLLYIELIRGNPLIIVIFWIYFFIPVL---------FNTFFNVFWSA 463

Query: 111 MLCLGTFTAARVCEQVRSGINSLPRGQRNAGLAMGFTLAQTYRYVMLPMSFRIIVPPLTS 170
            + L  FT A + E VR+GI ++P GQ  A  + G T  QT R ++LP + + ++P +  
Sbjct: 464 TIALTLFTGAYLAEIVRAGIQNIPAGQVEAAYSTGLTFVQTMRRIILPQALKQMIPAIVG 523

Query: 171 EFLNIFKNSAVASTIGLLEL--AAQG--RQLVDYTAQPYESFIAVTLMYML 217
           +F+ IFK++++A  +G+LEL   AQG   +L+ Y   P E +  V  +Y +
Sbjct: 524 QFIAIFKDTSLAFVLGVLELTFVAQGINNRLMVY---PMEIYGTVAFLYFI 571