Pairwise Alignments

Query, 503 a.a., RNA polymerase factor sigma-54 from Ralstonia sp. UNC404CL21Col

Subject, 502 a.a., RNA polymerase sigma-54 factor from Pseudomonas stutzeri RCH2

 Score =  404 bits (1038), Expect = e-117
 Identities = 230/516 (44%), Positives = 323/516 (62%), Gaps = 28/516 (5%)

Query: 1   MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARI 60
           MK SL L++ Q L +TPQLQQ+IRLLQLST++LQQE+++AL  NP+LERE +  D     
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLEREEDGDDF---- 56

Query: 61  GADGSVSALQSNSATPLPTESPSPAPNGGDNSDSADNSYENGHDSGADFDSDYGSDRS-- 118
                      +S+ P+   +  P   G + S S +++YE    SG   D     +R   
Sbjct: 57  -----------DSSDPMAEAADRPGDTGTEKSSSQESTYEEPSHSGESADDGDWGERIPS 105

Query: 119 ----DWSLDDF----ARKPQSDEDDRAPLQLREAEQ-SLREFLMEQLAPLKLSMRDKGLV 169
               D + +D     A    S++DD      R +   SL+  L+ QL    +S  D+ + 
Sbjct: 106 ELPVDTAWEDIYQTSASSLPSNDDDEWDFTSRTSNGISLQSHLLWQLNLAPMSDTDRLIA 165

Query: 170 IFLIESLDDEGYLSGTLDEILADLPAELEVELDELQAALRMLQSFDPPGIGARSAAECLS 229
             LI+ ++D+GYL  TL EI+     ELE+ELDE++  LR +Q F+P GIGAR   ECL 
Sbjct: 166 TTLIDCINDQGYLEETLQEIVDSFDPELEIELDEVEVVLRRIQQFEPAGIGARDLRECLL 225

Query: 230 LQLHRLD--SPAKALALIIVNQHLELLAARDYTRLKKALSVDEPALKAAHELIRSLAPFP 287
           LQL +L   +P  + A  +V+ +L++L +RDY+ L + + + E  L+   ELI+SL P P
Sbjct: 226 LQLRQLSERTPWLSEAQRLVSDYLDILGSRDYSLLMRRMKLKEDELRQVIELIQSLNPRP 285

Query: 288 GHAFGRAEADFVVPDVVVRKTSAGWMAQLNPDVMPRLRINDMYAQILRSSRGESGAANLQ 347
           G     +E ++VVPDV+VRK +  W+ +LN + MPRLR+N  YA  ++ +   +    ++
Sbjct: 286 GSQIEASEPEYVVPDVIVRKHNDRWLVELNQEAMPRLRVNAQYAGFVKRADSSADNTFMR 345

Query: 348 QKLQEARWLIKNIQQRFDTILRVSQAIVERQKSFFTHGEIAMRPLVLREIADTLGLHEST 407
            +LQEARW IK++  R +T+++V+  IVE Q++F  HG+ AM+PLVL +IA+ +G+HEST
Sbjct: 346 NQLQEARWFIKSLLSRNETLMKVATQIVEHQRAFLEHGDEAMKPLVLHDIAEAVGMHEST 405

Query: 408 ISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKNPLSDS 467
           ISRVTT KYM TP G +ELKYFF SHVST  GG  SSTAIRA+IK+LV AE+ K PLSDS
Sbjct: 406 ISRVTTQKYMHTPRGIYELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENQKKPLSDS 465

Query: 468 RIAELLGEQGFVVARRTVAKYREALKIPAVNLRKSL 503
           +IA LL  QG  VARRTVAKYRE+L I   + RK L
Sbjct: 466 KIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKRL 501