Pairwise Alignments

Query, 503 a.a., RNA polymerase factor sigma-54 from Ralstonia sp. UNC404CL21Col

Subject, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

 Score =  384 bits (987), Expect = e-111
 Identities = 221/507 (43%), Positives = 320/507 (63%), Gaps = 25/507 (4%)

Query: 1   MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARI 60
           MK SLQL+L Q LA+TPQLQQ+IRLLQLST++LQQE+++AL  NPLLE E    +     
Sbjct: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAP--- 57

Query: 61  GADGSVSALQSNSATPL-PTESPSPAPNGGDNSDSADNSYENGH-DSGADFDSDYGSDRS 118
               S+ +++    +P  P E   P P   D+SD  + S  +   +    +D  Y ++  
Sbjct: 58  ----SLDSVRMTEESPREPEELYEPEPQ--DSSDLIEKSEISAELEMDTTWDEVYSANTG 111

Query: 119 DWSLDDFARKPQSDEDDRAPLQLREAEQSLREFLMEQLAPLKLSMRDKGLVIFLIESLDD 178
              L           DD AP+   E  Q+L+++L  QL     S  D+ + + LI+++DD
Sbjct: 112 STGLA---------LDDDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDD 162

Query: 179 EGYLSGTLDEILADLPAELEVELDELQAALRMLQSFDPPGIGARSAAECLSLQL--HRLD 236
            GYL+ +L+EI   L ++ ++ELDE++A  + +Q FDP G+ + +  +CL LQL  +  D
Sbjct: 163 YGYLTVSLEEIQESLRSD-DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCD 221

Query: 237 SPAKALALIIVNQHLELLAARDYTRLKKALSVDEPALKAAHELIRSLAPFPGHAFGRAEA 296
           +P    A ++++Q+++ L  RDY  + K   + E  L+   +LI+ L P PG    +  A
Sbjct: 222 TPWLEEARLLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHA 281

Query: 297 DFVVPDVVVRKTSAGWMAQLNPDVMPRLRINDMYAQILRSSRGESGAANLQQKLQEARWL 356
           ++V+PDV V K    W+  +NPD +P+L+IN  YA ++R +  ES    ++  LQEA+WL
Sbjct: 282 EYVIPDVSVYKEQGRWLVTINPDSVPKLKINQQYADLMRGNNAESNY--IRTNLQEAKWL 339

Query: 357 IKNIQQRFDTILRVSQAIVERQKSFFTHGEIAMRPLVLREIADTLGLHESTISRVTTNKY 416
           IK+++ R +T+L+V++ IVE Q  FF +GE AM+P+VL ++A  + +HESTISRVTT KY
Sbjct: 340 IKSLESRNETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKY 399

Query: 417 MATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKNPLSDSRIAELLGEQ 476
           M TP G FELKYFF SHVST+ GG  SSTAIRALIK+LV AE+P  PLSDS+IA LL +Q
Sbjct: 400 MHTPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQ 459

Query: 477 GFVVARRTVAKYREALKIPAVNLRKSL 503
           G  VARRT+AKYRE+L I   + RK L
Sbjct: 460 GIQVARRTIAKYRESLGIAPSSQRKRL 486