Pairwise Alignments

Query, 503 a.a., RNA polymerase factor sigma-54 from Ralstonia sp. UNC404CL21Col

Subject, 491 a.a., RNA polymerase sigma-54 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  392 bits (1006), Expect = e-113
 Identities = 221/509 (43%), Positives = 315/509 (61%), Gaps = 24/509 (4%)

Query: 1   MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARI 60
           MK SLQL+L Q L +TPQLQQ+IRLLQLS++ELQQE++QAL  NPLLE E E  D  +  
Sbjct: 1   MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEEQFDAPSER 60

Query: 61  GADGSVSALQSNSATPLPTESPSPAPNGGDNSDSADNSYENGHDSGADFDSDYGSDRSDW 120
             D + +     SA P   ++ +         D A++  +         D+ +       
Sbjct: 61  KQDLADTDFSETSAQPQEQDNSTV--------DIAESLTKESLPEELPMDTTWD------ 106

Query: 121 SLDDFARKPQS----DEDDRAPLQLREAEQSLREFLMEQLAPLKLSMRDKGLVIFLIESL 176
             + F   P S      +D  P Q  E  + L E L  Q      S  D  +   +I+++
Sbjct: 107 --EVFTASPNSGSGASREDDMPFQ-GETSEGLYEHLEWQKNLTPFSETDLAIATAIIDAI 163

Query: 177 DDEGYLSGTLDEILADLPAELEVELDELQAALRMLQSFDPPGIGARSAAECLSLQLHRL- 235
           DD+GYL+ + ++IL  +    E+ELDE++A L+ +Q FDP G+ AR  +ECL +QL    
Sbjct: 164 DDQGYLTQSTEDILEAM-GNPEIELDEVEAVLKRIQHFDPVGVAARDLSECLLIQLSHFS 222

Query: 236 -DSPAKALALIIVNQHLELLAARDYTRLKKALSVDEPALKAAHELIRSLAPFPGHAFGRA 294
            D+P    A +++  HL+L+AARD+  L +   + E  L+ +  LI++L P PG      
Sbjct: 223 PDTPHLENARMLIKDHLDLIAARDFRLLMRKTKLKEDELRDSIALIQTLNPRPGLLITAV 282

Query: 295 EADFVVPDVVVRKTSAGWMAQLNPDVMPRLRINDMYAQILRSSRGESGAANLQQKLQEAR 354
           + ++VVPDV V K +  W+ +LNPD MP++ +N  YA + RSS+ ++ +  ++  LQEA+
Sbjct: 283 DEEYVVPDVSVSKKNGRWVVELNPDCMPKINVNQQYAAMARSSKNQADSQFIRGHLQEAK 342

Query: 355 WLIKNIQQRFDTILRVSQAIVERQKSFFTHGEIAMRPLVLREIADTLGLHESTISRVTTN 414
           W IK+++ R +T+L+V+  IV+ Q+ FF +GE AM+P+VL +IA+ + +HESTISRVTT 
Sbjct: 343 WFIKSLESRNETLLKVANCIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQ 402

Query: 415 KYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKNPLSDSRIAELLG 474
           KYM TP G FELKYFF SHV T+ GG  SSTAIRA IK+LV AE+ K PLSDS++A+LL 
Sbjct: 403 KYMHTPKGLFELKYFFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLA 462

Query: 475 EQGFVVARRTVAKYREALKIPAVNLRKSL 503
           EQG  VARRT+AKYREA+ IP  N RKSL
Sbjct: 463 EQGINVARRTIAKYREAMLIPPSNQRKSL 491