Pairwise Alignments

Query, 363 a.a., COX15/CtaA family protein from Ralstonia sp. UNC404CL21Col

Subject, 327 a.a., cytochrome oxidase assembly (RefSeq) from Shewanella amazonensis SB2B

 Score =  214 bits (544), Expect = 3e-60
 Identities = 122/323 (37%), Positives = 183/323 (56%), Gaps = 8/323 (2%)

Query: 30  RKLVWITAFLTLDLIMFGSFTRLTDSGLGCPDWPGCYGTSNPFHARDDIHAAQAAMPSGP 89
           R L+ +T   TL +I+ G++TRL+D+GLGCPDWPGCYG      A  ++  A++  P   
Sbjct: 4   RNLLKLTLACTLMVILLGAYTRLSDAGLGCPDWPGCYGHFKVPSAAHELAKAESLFPEHT 63

Query: 90  VTWMKAWIEMTHRYFALALGVLIITLVVLAWVKRKELKQSPWYATAVLALVCVQGAFGAW 149
           +   KAW EM HRY A +LG+L+I ++V  +  ++  ++ P +   +L L+  QGA GAW
Sbjct: 64  IDPAKAWPEMIHRYIASSLGLLVILVLVACYRLKEAPRKLPIF---ILLLILFQGALGAW 120

Query: 150 TVTLKLQPAIVVTHLLLGMSLLAALIWLGCKNDVPRVV--DERGASLRMAAAIGLALLVV 207
           TVT+KL P +V++HLL G +LL+ L  L  +    R+   D      +  A   + +LV 
Sbjct: 121 TVTMKLMPVVVMSHLLGGFTLLSLLTLLYLRTSGFRIPGGDPGMRQYQRLALACVGVLVA 180

Query: 208 QIALGGWVSTNYAVLACTDFPLCNGQWVPPMDFAHGFTFWRQLGKTAGGDFISHDALVAI 267
           QI LGGW S+NYA LACT+ P C G W   +  A  F+ ++    +     + + A + I
Sbjct: 181 QILLGGWTSSNYAALACTELPFCEGDWTTNLKIADAFSPFQGTHPSFEFGVLDYHARMTI 240

Query: 268 HWTHRVFAVV---VLSYLAWLGVRARRIDGIGRVATVLLVVLAVQLATGLSNIVLGWPLL 324
           H  HR  A++   +L  LA+  +       +     VL   L +QL  G+SN+VL  PL 
Sbjct: 241 HIAHRFGAMITAALLGLLAFRIINRAHSKVLRNAGWVLAGFLVLQLGLGISNVVLHLPLA 300

Query: 325 AAVAHNGGAAVLLLLMVRLHYLI 347
            AVAHN GAA LL+ +V ++Y +
Sbjct: 301 IAVAHNLGAAFLLVTLVFINYAL 323



 Score = 42.0 bits (97), Expect = 2e-08
 Identities = 46/183 (25%), Positives = 75/183 (40%), Gaps = 20/183 (10%)

Query: 11  LIALIPLCYVLVKGDR--------NKYRKLVWITAFLTLDLIMFGSFTRLTDSGLGCPDW 62
           L++L+ L Y+   G R         +Y++L      + +  I+ G +T    + L C + 
Sbjct: 141 LLSLLTLLYLRTSGFRIPGGDPGMRQYQRLALACVGVLVAQILLGGWTSSNYAALACTEL 200

Query: 63  PGCYG--TSNPFHARDDIHAAQAAMPS---GPVTW-MKAWIEMTHRYFALALGVL--IIT 114
           P C G  T+N     D     Q   PS   G + +  +  I + HR+ A+    L  ++ 
Sbjct: 201 PFCEGDWTTN-LKIADAFSPFQGTHPSFEFGVLDYHARMTIHIAHRFGAMITAALLGLLA 259

Query: 115 LVVLAWVKRKELKQSPWYATAVLALVCVQGAFGAWTVTLKLQPAIVVTHLLLGMSLLAAL 174
             ++     K L+ + W     L L   Q   G   V L L  AI V H L    LL  L
Sbjct: 260 FRIINRAHSKVLRNAGWVLAGFLVL---QLGLGISNVVLHLPLAIAVAHNLGAAFLLVTL 316

Query: 175 IWL 177
           +++
Sbjct: 317 VFI 319



 Score = 30.4 bits (67), Expect = 7e-05
 Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 193 SLRMAAAIGLALLVVQIALGGWVSTNYAVLACTDFPLCNGQWVPPMDFAHGFTFWRQLGK 252
           +LR    + LA  ++ I LG +   + A L C D+P C G +  P   AH      +L K
Sbjct: 2   TLRNLLKLTLACTLMVILLGAYTRLSDAGLGCPDWPGCYGHFKVP-SAAH------ELAK 54

Query: 253 TAGGDFISHDALVAIHW---THRVFAVVVLSYLAWLGVRARRIDGIGRVATV-LLVVLAV 308
            A   F  H    A  W    HR  A  +   +  + V   R+    R   + +L+++  
Sbjct: 55  -AESLFPEHTIDPAKAWPEMIHRYIASSLGLLVILVLVACYRLKEAPRKLPIFILLLILF 113

Query: 309 QLATGLSNIVLGWPLLAAVAHNGGAAVLLLLMVRLH 344
           Q A G   + +    +  ++H  G   LL L+  L+
Sbjct: 114 QGALGAWTVTMKLMPVVVMSHLLGGFTLLSLLTLLY 149