Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Paraburkholderia bryophila 376MFSha3.1

Subject, 1356 a.a., DNA-directed RNA polymerase, beta subunit from Pseudomonas stutzeri RCH2

 Score = 1806 bits (4679), Expect = 0.0
 Identities = 909/1367 (66%), Positives = 1092/1367 (79%), Gaps = 14/1367 (1%)

Query: 1    MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60
            M YS+TEKKRIRK F+K P V  VP+LLA QL+S+  FLQA  +  Q +  GL AAF SV
Sbjct: 1    MAYSYTEKKRIRKDFSKLPHVMDVPYLLAIQLDSYREFLQAGATKDQFRDIGLHAAFKSV 60

Query: 61   FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK 120
            FPI+S++G A LE+V Y L  PAF++KEC  RG+T+   LR KVRL++ DKES +K  +K
Sbjct: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNK-AIK 119

Query: 121  EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 180
            ++KEQEVYMGEIPLMT  G+F+INGTERVIVSQLHRSPGVFF+HD+GKTHSSGKLL+SAR
Sbjct: 120  DIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 179

Query: 181  IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPE 240
            IIPYRGSWLDFEFDPKD ++ R+DRRRK+P ++LL+A+  + E+IL  F+  + F +  E
Sbjct: 180  IIPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALNYSTEEILDAFYDTNVFHVKGE 239

Query: 241  GAQMEFVPERLRGEVARFDITDRDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLLG 300
               +E VP+RLRGE+A FDI D +G VIV++ +RI A+HI  LD +  K + +P DY+LG
Sbjct: 240  TLSLELVPQRLRGEIASFDIKDENGKVIVEQGRRITARHINQLDKSGIKELEMPMDYVLG 299

Query: 301  RVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTLRID 360
            R +AK +V   TGE+IA  N E+T  V+ K+ ++++   +TLYTND+D GP+IS TL+ID
Sbjct: 300  RTVAKAIVHPATGEIIAECNTELTVDVMAKIVKAQVVRFETLYTNDIDCGPFISDTLKID 359

Query: 361  ETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI 420
             T +++ A + IYRMMRPGEPPT++A E LFN LF++ + YDLS VGRMKFNRR+GR EI
Sbjct: 360  STTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFASERYDLSAVGRMKFNRRIGRTEI 419

Query: 421  VGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA 480
             G   L  +DI+A +K LV++RNGKG VDDIDHLGNRRVRCVGE+AENQFR GLVRVERA
Sbjct: 420  EGSGVLSREDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERA 479

Query: 481  VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG 540
            VKERL  AESE LMP DLIN+KP+++A++EFFGSSQLSQFMDQ NPLSEITHKRRVSALG
Sbjct: 480  VKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALG 539

Query: 541  PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV 600
            PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLA YA  N+YGFLE+PYR V
Sbjct: 540  PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVV 599

Query: 601  VDGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQYMD 660
             +G+VTD+I +LSAIEE  +VIAQA+A + +   L DELV+ R   E  +  P+ +  MD
Sbjct: 600  KEGEVTDEIVFLSAIEEADHVIAQASAKL-DGRKLVDELVAVRHLNEFTVKAPEDVTLMD 658

Query: 661  VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT 720
            V+P Q+VSVAASLIPFLEHDDANRALMGSNMQRQAVP LR +K +VGTG+ER VA DSG 
Sbjct: 659  VSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTGMERNVARDSGV 718

Query: 721  TVQAFRGGVVDYVDAGRMVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIVKVG 780
             V A RGGV+D VDA R+V+RV+D E   G+ GVDIYNL KYTRSNQNT INQRP+V+ G
Sbjct: 719  CVVARRGGVIDSVDASRVVVRVHDAEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVRKG 778

Query: 781  DIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE 840
            D+V RGD++ADG STD+GELALGQNM VAFMPWNGYNFEDSIL+SE+VV +DR+T+IHI+
Sbjct: 779  DVVERGDIMADGPSTDMGELALGQNMRVAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQ 838

Query: 841  ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ 900
            EL  V+RDTKLGPEEIT DI N+ E  L +LDE+GIVY+GAEV  GD+LVGKVTPKGETQ
Sbjct: 839  ELTCVSRDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKGETQ 898

Query: 901  LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK 960
            LTPEEKLLRAIFGEKASDVKDTSLRVP+G  GTVIDVQVF R+G++RD RA  I   +L 
Sbjct: 899  LTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFIRDGVERDSRALAIEKMQLD 958

Query: 961  RYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWFDIR 1020
              R DLN++ RIVEG  F+RL   L G  A GG   L KG  I    L  L+H  WF +R
Sbjct: 959  EIRKDLNEEFRIVEGATFERLRSALVGATAEGG-AGLKKGAVITDEILDGLEHGQWFKLR 1017

Query: 1021 LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ 1080
            +A++    QLE  +  +  +R   D  FE+K++KL QGD+L PGVLK+VKVYLA+KRR+Q
Sbjct: 1018 MAEDALNEQLEKAQAYLSDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQ 1077

Query: 1081 PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA 1140
            PGDKMAGRHGNKGVVS I+P+EDMP+ A+G P D+VLNPLGVPSRMNVGQ+LE HLG AA
Sbjct: 1078 PGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAA 1137

Query: 1141 KGLGWRIGEMLQRQAKIAELREFLTKIYNE-SGRAEELDSFTDDEIVELAKNLREGVPFA 1199
            KGLG +I  ML+ Q K+AELR+FL +IYNE  GR E LD  +D E+++LA NLR+GVP A
Sbjct: 1138 KGLGEKINLMLEEQRKVAELRKFLHEIYNEIGGRQESLDDLSDQEVLDLANNLRKGVPMA 1197

Query: 1200 TPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVGYMHYL 1259
            TPVFDGA E E+   L LA   D+       P   Q++L+DGRTG  FERT TVGYM+ L
Sbjct: 1198 TPVFDGAKEREIKAMLKLA---DL-------PESGQMQLFDGRTGNKFERTTTVGYMYML 1247

Query: 1260 KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTV 1319
            KL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEMLTV
Sbjct: 1248 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1307

Query: 1320 KSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLD 1366
            KSDDV GRTK+Y+N+V GDH ++AGMPESFNVL+KEIRSLGIDIDL+
Sbjct: 1308 KSDDVNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIDLE 1354