Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Paraburkholderia bryophila 376MFSha3.1

Subject, 1380 a.a., DNA-directed RNA polymerase subunit beta from Sinorhizobium meliloti 1021

 Score = 1583 bits (4100), Expect = 0.0
 Identities = 791/1370 (57%), Positives = 1023/1370 (74%), Gaps = 16/1370 (1%)

Query: 4    SFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSVFPI 63
            SF  ++R+RK F K P V ++P L+  Q  S+  FL  D     R  EGLQA F SVFPI
Sbjct: 6    SFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPQGGRPDEGLQAVFKSVFPI 65

Query: 64   VSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLD-KESPSKPVVKEV 122
               +G + LEFVSY    P F+++EC+QR LTY + L+  +RL++ D  E      +K++
Sbjct: 66   KDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDI 125

Query: 123  KEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII 182
            KEQ VYMG++PLMT  G+F++NGTERVIVSQ+HRSPGVFF+HDKGK+HSSGKLLF+AR+I
Sbjct: 126  KEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAARVI 185

Query: 183  PYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPEGA 242
            PYRGSWLD EFD KD+++ R+DRRRK+PVT LL A+G+  E+IL  F+    +    EG 
Sbjct: 186  PYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYQRDGEGW 245

Query: 243  QMEFVPERLRGEVARFDITDRD-GNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLLGR 301
            ++ F P+ L+G+    D+ D D G V+V+  K++  + +R L     K +   +D L G 
Sbjct: 246  RVPFQPDALKGQKTLADMIDADTGEVVVESGKKLTPRLLRQLQEKGLKALKATDDDLYGN 305

Query: 302  VLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTLRIDE 361
             LA++VV+ +TGE+   A DEI E  L  +  +   +I  L  + ++ G YI +TL  D+
Sbjct: 306  YLAEDVVNFETGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINIGAYIRNTLSADK 365

Query: 362  TADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEIV 421
              ++  A   IYR+MRPGEPPT ++ EA+FN LF+  + YDLS VGR+K N R+  D   
Sbjct: 366  NENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFFDAERYDLSAVGRVKMNMRLDLDVPD 425

Query: 422  GPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERAV 481
               TL+ +DILA +K+LVELR+GKGE+DDID+LGNRRVR VGEL ENQ+R GL+R+ERA+
Sbjct: 426  TVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLRMERAI 485

Query: 482  KERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGP 541
            KER+   E + +MP DLIN+KP ++A+REFFGSSQLSQFMDQ NPLSEITHKRR+SALGP
Sbjct: 486  KERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGP 545

Query: 542  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKVV 601
            GGLTRERAGFEVRDVHPTHYGR+CPIETPEGPNIGLINSLA +A +N+YGF+E+PYRK+V
Sbjct: 546  GGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIV 605

Query: 602  DGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQYMDV 661
            DGKVT+ + YLSA+EE +Y +AQAN+ + +DG+ ++E V  R AGE ++   D I  MDV
Sbjct: 606  DGKVTNDVVYLSAMEEAKYHVAQANSVLDDDGSFSEEFVVCRHAGEVMLAPRDNINLMDV 665

Query: 662  APSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGTT 721
            +P Q+VSVAA+LIPFLE+DDANRALMGSNMQRQAVP LR E   VGTG+E  VA DSG  
Sbjct: 666  SPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVARDSGAA 725

Query: 722  VQAFRGGVVDYVDAGRMVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIVKVGD 781
            + A RGG+VD VDA R+VIR  +D       GVDIY L K+ RSNQNT +NQRP+V VGD
Sbjct: 726  IAARRGGIVDQVDATRIVIRATED-LDPSKSGVDIYRLQKFQRSNQNTCVNQRPLVTVGD 784

Query: 782  IVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEE 841
            ++++GD++ADG STDLG+LALG+N LVAFMPWNGYN+EDSIL+SE++V DD +TSIHIEE
Sbjct: 785  VINKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSIHIEE 844

Query: 842  LNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQL 901
              V+ARDTKLGPEEITRDI N++E  L  LDE+GIVYIGAEV+ GD+LVGK+TPKGE+ +
Sbjct: 845  FEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPM 904

Query: 902  TPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELKR 961
            TPEEKLLRAIFGEKASDV+DTS+R+P G  GTV++V+VF R G+++D+RA  I  +E++R
Sbjct: 905  TPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIEREEIER 964

Query: 962  YRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWFDIRL 1021
               D +D+  I++ + + RL  ML G VA  GPK   KGT++    + +     W+   +
Sbjct: 965  LAKDRDDEQAILDRNVYARLVDMLRGHVAVAGPKGFKKGTELSNVVISEYPRSQWWMFAI 1024

Query: 1022 ADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQP 1081
             DE+A  ++EA++   ++ + + +  F +K +K+ +GDE+PPGV+KMVKV++AVKR++QP
Sbjct: 1025 EDEKAQGEIEALRAQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQP 1084

Query: 1082 GDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAAK 1141
            GDKMAGRHGNKGVVS+IVPIEDMP++ DG   DVVLNPLGVPSRMNVGQ+LE HLGWA  
Sbjct: 1085 GDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLGWACA 1144

Query: 1142 GLGWRIGEML---QRQAKIAELREFLTKIYNESGRAEELDSFTDDEIVELAKNLREGVPF 1198
            G+G +IG ML   +  A I  LR+ +  +     + E +  + D+ IV LA+  R GV  
Sbjct: 1145 GMGKKIGAMLDAYKAGADIQPLRDTIDSVIGSGPKGEPIKQYDDESIVRLAEQTRRGVSI 1204

Query: 1199 ATPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVGYMHY 1258
            ATPVFDGA E +++  L+ A        L +T    Q  LYDGRTGE F+R VTVGY++ 
Sbjct: 1205 ATPVFDGAVEADVNEMLEQA-------GLKVT---GQSTLYDGRTGETFDRQVTVGYIYM 1254

Query: 1259 LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLT 1318
            LKL+HLVDDK+HARS GPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEMLT
Sbjct: 1255 LKLNHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1314

Query: 1319 VKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368
            VKSDDV GRTKVYE +V+GD   +AG+PESFNVLVKE+RSLG+ ++L+ +
Sbjct: 1315 VKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENS 1364